Protein–RNA interactions for Protein: O43542

XRCC3, DNA repair protein XRCC3, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3O43542 ME2-208ENST00000638937 2471 ntTSL 5 BASIC20.18■□□□□ 0.82
XRCC3O43542 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
XRCC3O43542 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
XRCC3O43542 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC20.18■□□□□ 0.82
XRCC3O43542 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
XRCC3O43542 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
XRCC3O43542 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
XRCC3O43542 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC20.17■□□□□ 0.82
XRCC3O43542 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
XRCC3O43542 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
XRCC3O43542 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
XRCC3O43542 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC20.17■□□□□ 0.82
XRCC3O43542 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
XRCC3O43542 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC20.17■□□□□ 0.82
XRCC3O43542 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
XRCC3O43542 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
XRCC3O43542 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
XRCC3O43542 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
XRCC3O43542 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
XRCC3O43542 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
XRCC3O43542 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
XRCC3O43542 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
XRCC3O43542 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
XRCC3O43542 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
XRCC3O43542 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
XRCC3O43542 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
XRCC3O43542 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
XRCC3O43542 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC20.15■□□□□ 0.82
XRCC3O43542 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
XRCC3O43542 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC20.15■□□□□ 0.82
XRCC3O43542 ABCB10P4-201ENST00000566803 2184 ntBASIC20.15■□□□□ 0.82
XRCC3O43542 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
XRCC3O43542 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
XRCC3O43542 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
XRCC3O43542 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC20.14■□□□□ 0.81
XRCC3O43542 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
XRCC3O43542 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC20.14■□□□□ 0.81
XRCC3O43542 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
XRCC3O43542 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
XRCC3O43542 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
XRCC3O43542 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC20.13■□□□□ 0.81
XRCC3O43542 CHST11-203ENST00000547956 936 ntTSL 2 BASIC20.13■□□□□ 0.81
XRCC3O43542 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
XRCC3O43542 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
XRCC3O43542 SHD-204ENST00000599689 1729 ntTSL 5 BASIC20.13■□□□□ 0.81
XRCC3O43542 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
XRCC3O43542 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
XRCC3O43542 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
XRCC3O43542 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
XRCC3O43542 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
XRCC3O43542 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
XRCC3O43542 AL162393.1-201ENST00000437852 946 ntBASIC20.12■□□□□ 0.81
XRCC3O43542 CHST11-202ENST00000546689 756 ntTSL 2 BASIC20.12■□□□□ 0.81
XRCC3O43542 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
XRCC3O43542 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
XRCC3O43542 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
XRCC3O43542 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
XRCC3O43542 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
XRCC3O43542 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC20.11■□□□□ 0.81
XRCC3O43542 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
XRCC3O43542 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
XRCC3O43542 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
XRCC3O43542 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC20.11■□□□□ 0.81
XRCC3O43542 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
XRCC3O43542 MIR6089-201ENST00000616698 64 ntBASIC20.11■□□□□ 0.81
XRCC3O43542 LSR-205ENST00000427250 1606 ntTSL 2 BASIC20.11■□□□□ 0.81
XRCC3O43542 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC20.1■□□□□ 0.81
XRCC3O43542 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC20.1■□□□□ 0.81
XRCC3O43542 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
XRCC3O43542 DUX4L13-201ENST00000554103 1267 ntBASIC20.1■□□□□ 0.81
XRCC3O43542 DUX4L15-201ENST00000611059 1267 ntBASIC20.1■□□□□ 0.81
XRCC3O43542 DUX4L23-201ENST00000615195 1269 ntBASIC20.1■□□□□ 0.81
XRCC3O43542 DUX4L24-201ENST00000617576 1269 ntBASIC20.1■□□□□ 0.81
XRCC3O43542 DUX4L22-201ENST00000618238 1269 ntBASIC20.1■□□□□ 0.81
XRCC3O43542 DUX4L20-201ENST00000619712 1269 ntBASIC20.1■□□□□ 0.81
XRCC3O43542 DUX4L21-201ENST00000622058 1269 ntBASIC20.1■□□□□ 0.81
XRCC3O43542 DUX4L10-201ENST00000622460 1267 ntBASIC20.1■□□□□ 0.81
XRCC3O43542 DUX4L25-201ENST00000624915 1269 ntBASIC20.1■□□□□ 0.81
XRCC3O43542 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
XRCC3O43542 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
XRCC3O43542 NFE2L3P1-201ENST00000588207 1959 ntBASIC20.1■□□□□ 0.81
XRCC3O43542 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC20.09■□□□□ 0.81
XRCC3O43542 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
XRCC3O43542 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
XRCC3O43542 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC20.09■□□□□ 0.81
XRCC3O43542 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
XRCC3O43542 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
XRCC3O43542 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
XRCC3O43542 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC20.09■□□□□ 0.81
XRCC3O43542 LINC01971-201ENST00000617888 1048 ntBASIC20.09■□□□□ 0.81
XRCC3O43542 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
XRCC3O43542 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC20.08■□□□□ 0.81
XRCC3O43542 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
XRCC3O43542 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC20.08■□□□□ 0.81
XRCC3O43542 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
XRCC3O43542 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
XRCC3O43542 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
XRCC3O43542 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC20.08■□□□□ 0.81
XRCC3O43542 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
XRCC3O43542 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC20.08■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 14.3 ms