Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDX2Q99626 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CDX2Q99626 AC107373.2-201ENST00000607735 490 ntBASIC16.63■□□□□ 0.25
CDX2Q99626 AC103691.2-201ENST00000618824 433 ntBASIC16.63■□□□□ 0.25
CDX2Q99626 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC16.63■□□□□ 0.25
CDX2Q99626 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDX2Q99626 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC16.63■□□□□ 0.25
CDX2Q99626 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CDX2Q99626 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC16.63■□□□□ 0.25
CDX2Q99626 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDX2Q99626 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDX2Q99626 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDX2Q99626 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDX2Q99626 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
CDX2Q99626 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
CDX2Q99626 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC16.62■□□□□ 0.25
CDX2Q99626 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC16.62■□□□□ 0.25
CDX2Q99626 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CDX2Q99626 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDX2Q99626 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC16.62■□□□□ 0.25
CDX2Q99626 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDX2Q99626 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CDX2Q99626 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC16.62■□□□□ 0.25
CDX2Q99626 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDX2Q99626 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDX2Q99626 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDX2Q99626 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CDX2Q99626 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDX2Q99626 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDX2Q99626 SFT2D2-202ENST00000367829 491 ntTSL 5 BASIC16.62■□□□□ 0.25
CDX2Q99626 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CDX2Q99626 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC16.62■□□□□ 0.25
CDX2Q99626 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CDX2Q99626 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC16.62■□□□□ 0.25
CDX2Q99626 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC16.62■□□□□ 0.25
CDX2Q99626 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC16.62■□□□□ 0.25
CDX2Q99626 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC16.62■□□□□ 0.25
CDX2Q99626 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC16.62■□□□□ 0.25
CDX2Q99626 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC16.62■□□□□ 0.25
CDX2Q99626 AC087045.2-201ENST00000606279 1003 ntBASIC16.62■□□□□ 0.25
CDX2Q99626 AP001527.2-201ENST00000614441 631 ntBASIC16.62■□□□□ 0.25
CDX2Q99626 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
CDX2Q99626 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CDX2Q99626 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDX2Q99626 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDX2Q99626 LINC00470-210ENST00000584090 1334 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CDX2Q99626 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDX2Q99626 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CDX2Q99626 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC16.62■□□□□ 0.25
CDX2Q99626 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC16.62■□□□□ 0.25
CDX2Q99626 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDX2Q99626 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
CDX2Q99626 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CDX2Q99626 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
CDX2Q99626 BCL2-203ENST00000589955 5011 ntBASIC16.61■□□□□ 0.25
CDX2Q99626 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC16.61■□□□□ 0.25
CDX2Q99626 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDX2Q99626 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDX2Q99626 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CDX2Q99626 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC16.61■□□□□ 0.25
CDX2Q99626 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
CDX2Q99626 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDX2Q99626 PFN2-202ENST00000423691 911 ntTSL 2 BASIC16.61■□□□□ 0.25
CDX2Q99626 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDX2Q99626 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC16.61■□□□□ 0.25
CDX2Q99626 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC16.61■□□□□ 0.25
CDX2Q99626 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
CDX2Q99626 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC16.61■□□□□ 0.25
CDX2Q99626 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC16.61■□□□□ 0.25
CDX2Q99626 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC16.61■□□□□ 0.25
CDX2Q99626 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC16.61■□□□□ 0.25
CDX2Q99626 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CDX2Q99626 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC16.61■□□□□ 0.25
CDX2Q99626 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDX2Q99626 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDX2Q99626 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC16.61■□□□□ 0.25
CDX2Q99626 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDX2Q99626 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDX2Q99626 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDX2Q99626 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
CDX2Q99626 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC16.6■□□□□ 0.25
CDX2Q99626 AL031731.1-201ENST00000642131 2094 ntBASIC16.6■□□□□ 0.25
CDX2Q99626 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CDX2Q99626 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
CDX2Q99626 AC025271.4-201ENST00000621477 1726 ntBASIC16.6■□□□□ 0.25
CDX2Q99626 ACYP1-201ENST00000238618 627 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CDX2Q99626 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CDX2Q99626 CEP164P1-201ENST00000455142 418 ntBASIC16.6■□□□□ 0.25
CDX2Q99626 AC005730.2-201ENST00000564549 1184 ntBASIC16.6■□□□□ 0.25
CDX2Q99626 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CDX2Q99626 AL353770.1-201ENST00000614915 403 ntBASIC16.6■□□□□ 0.25
CDX2Q99626 LINC00969-257ENST00000625632 898 ntTSL 5 BASIC16.6■□□□□ 0.25
CDX2Q99626 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
CDX2Q99626 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CDX2Q99626 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
CDX2Q99626 AL354751.1-201ENST00000412768 1863 ntBASIC16.6■□□□□ 0.25
CDX2Q99626 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CDX2Q99626 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CDX2Q99626 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC16.6■□□□□ 0.25
CDX2Q99626 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms