Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
USP28Q96RU2 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
USP28Q96RU2 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC18.55■□□□□ 0.56
USP28Q96RU2 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC18.55■□□□□ 0.56
USP28Q96RU2 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
USP28Q96RU2 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC18.55■□□□□ 0.56
USP28Q96RU2 AC136621.1-201ENST00000624017 2304 ntBASIC18.55■□□□□ 0.56
USP28Q96RU2 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC18.55■□□□□ 0.56
USP28Q96RU2 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
USP28Q96RU2 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC18.55■□□□□ 0.56
USP28Q96RU2 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
USP28Q96RU2 GOLGA2P9-201ENST00000596977 1937 ntBASIC18.55■□□□□ 0.56
USP28Q96RU2 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC18.54■□□□□ 0.56
USP28Q96RU2 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC18.54■□□□□ 0.56
USP28Q96RU2 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
USP28Q96RU2 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
USP28Q96RU2 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
USP28Q96RU2 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
USP28Q96RU2 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
USP28Q96RU2 PMS2P7-201ENST00000506558 1336 ntBASIC18.54■□□□□ 0.56
USP28Q96RU2 REM2-202ENST00000536884 1331 ntTSL 2 BASIC18.54■□□□□ 0.56
USP28Q96RU2 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
USP28Q96RU2 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
USP28Q96RU2 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC18.54■□□□□ 0.56
USP28Q96RU2 AC134407.2-201ENST00000625089 1978 ntBASIC18.54■□□□□ 0.56
USP28Q96RU2 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
USP28Q96RU2 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC18.54■□□□□ 0.56
USP28Q96RU2 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
USP28Q96RU2 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
USP28Q96RU2 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
USP28Q96RU2 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC18.54■□□□□ 0.56
USP28Q96RU2 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
USP28Q96RU2 FDX1P1-201ENST00000449115 551 ntBASIC18.54■□□□□ 0.56
USP28Q96RU2 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC18.54■□□□□ 0.56
USP28Q96RU2 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
USP28Q96RU2 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC18.54■□□□□ 0.56
USP28Q96RU2 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
USP28Q96RU2 AL121894.2-201ENST00000602977 491 ntBASIC18.54■□□□□ 0.56
USP28Q96RU2 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
USP28Q96RU2 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC18.54■□□□□ 0.56
USP28Q96RU2 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC18.54■□□□□ 0.56
USP28Q96RU2 SSR4P1-203ENST00000599569 2260 ntBASIC18.54■□□□□ 0.56
USP28Q96RU2 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC18.54■□□□□ 0.56
USP28Q96RU2 AC011477.6-201ENST00000604980 1927 ntBASIC18.54■□□□□ 0.56
USP28Q96RU2 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC18.54■□□□□ 0.56
USP28Q96RU2 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC18.54■□□□□ 0.56
USP28Q96RU2 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
USP28Q96RU2 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
USP28Q96RU2 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
USP28Q96RU2 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
USP28Q96RU2 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
USP28Q96RU2 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
USP28Q96RU2 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC18.54■□□□□ 0.56
USP28Q96RU2 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
USP28Q96RU2 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
USP28Q96RU2 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
USP28Q96RU2 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
USP28Q96RU2 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
USP28Q96RU2 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC18.53■□□□□ 0.56
USP28Q96RU2 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
USP28Q96RU2 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
USP28Q96RU2 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC18.53■□□□□ 0.56
USP28Q96RU2 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
USP28Q96RU2 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
USP28Q96RU2 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
USP28Q96RU2 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC18.53■□□□□ 0.56
USP28Q96RU2 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
USP28Q96RU2 BEX3-201ENST00000361298 921 ntTSL 2 BASIC18.53■□□□□ 0.56
USP28Q96RU2 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
USP28Q96RU2 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
USP28Q96RU2 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
USP28Q96RU2 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC18.53■□□□□ 0.56
USP28Q96RU2 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
USP28Q96RU2 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC18.53■□□□□ 0.56
USP28Q96RU2 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC18.53■□□□□ 0.56
USP28Q96RU2 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC18.53■□□□□ 0.56
USP28Q96RU2 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
USP28Q96RU2 AL161645.1-201ENST00000622716 1255 ntBASIC18.53■□□□□ 0.56
USP28Q96RU2 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC18.53■□□□□ 0.56
USP28Q96RU2 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
USP28Q96RU2 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
USP28Q96RU2 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
USP28Q96RU2 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC18.53■□□□□ 0.56
USP28Q96RU2 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC18.53■□□□□ 0.56
USP28Q96RU2 FOXO1B-201ENST00000504678 1527 ntBASIC18.53■□□□□ 0.56
USP28Q96RU2 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
USP28Q96RU2 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
USP28Q96RU2 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC18.53■□□□□ 0.56
USP28Q96RU2 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC18.53■□□□□ 0.56
USP28Q96RU2 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
USP28Q96RU2 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
USP28Q96RU2 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC18.52■□□□□ 0.56
USP28Q96RU2 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
USP28Q96RU2 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
USP28Q96RU2 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
USP28Q96RU2 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC18.52■□□□□ 0.56
USP28Q96RU2 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
USP28Q96RU2 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
USP28Q96RU2 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
USP28Q96RU2 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms