Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC16.85■□□□□ 0.29
ATG4AQ8WYN0 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
ATG4AQ8WYN0 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
ATG4AQ8WYN0 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
ATG4AQ8WYN0 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
ATG4AQ8WYN0 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC16.84■□□□□ 0.29
ATG4AQ8WYN0 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
ATG4AQ8WYN0 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
ATG4AQ8WYN0 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC16.84■□□□□ 0.29
ATG4AQ8WYN0 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
ATG4AQ8WYN0 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
ATG4AQ8WYN0 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
ATG4AQ8WYN0 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
ATG4AQ8WYN0 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
ATG4AQ8WYN0 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC16.84■□□□□ 0.29
ATG4AQ8WYN0 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
ATG4AQ8WYN0 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
ATG4AQ8WYN0 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC16.84■□□□□ 0.29
ATG4AQ8WYN0 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC16.84■□□□□ 0.29
ATG4AQ8WYN0 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
ATG4AQ8WYN0 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC16.84■□□□□ 0.29
ATG4AQ8WYN0 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC16.84■□□□□ 0.29
ATG4AQ8WYN0 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC16.84■□□□□ 0.29
ATG4AQ8WYN0 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
ATG4AQ8WYN0 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
ATG4AQ8WYN0 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
ATG4AQ8WYN0 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
ATG4AQ8WYN0 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
ATG4AQ8WYN0 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC16.84■□□□□ 0.29
ATG4AQ8WYN0 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
ATG4AQ8WYN0 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC16.84■□□□□ 0.29
ATG4AQ8WYN0 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
ATG4AQ8WYN0 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC16.84■□□□□ 0.29
ATG4AQ8WYN0 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC16.84■□□□□ 0.29
ATG4AQ8WYN0 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
ATG4AQ8WYN0 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC16.84■□□□□ 0.29
ATG4AQ8WYN0 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC16.84■□□□□ 0.29
ATG4AQ8WYN0 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC16.84■□□□□ 0.29
ATG4AQ8WYN0 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC16.84■□□□□ 0.29
ATG4AQ8WYN0 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
ATG4AQ8WYN0 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
ATG4AQ8WYN0 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
ATG4AQ8WYN0 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
ATG4AQ8WYN0 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC16.83■□□□□ 0.29
ATG4AQ8WYN0 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.29
ATG4AQ8WYN0 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
ATG4AQ8WYN0 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC16.83■□□□□ 0.28
ATG4AQ8WYN0 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
ATG4AQ8WYN0 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
ATG4AQ8WYN0 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
ATG4AQ8WYN0 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
ATG4AQ8WYN0 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC16.83■□□□□ 0.28
ATG4AQ8WYN0 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
ATG4AQ8WYN0 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC16.83■□□□□ 0.28
ATG4AQ8WYN0 FALEC-201ENST00000416894 566 ntTSL 3 BASIC16.83■□□□□ 0.28
ATG4AQ8WYN0 AL450487.1-201ENST00000426799 995 ntBASIC16.83■□□□□ 0.28
ATG4AQ8WYN0 RHOQP3-201ENST00000437982 621 ntBASIC16.83■□□□□ 0.28
ATG4AQ8WYN0 FAAHP1-202ENST00000446499 1238 ntBASIC16.83■□□□□ 0.28
ATG4AQ8WYN0 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC16.83■□□□□ 0.28
ATG4AQ8WYN0 AC109635.5-201ENST00000533593 962 ntBASIC16.83■□□□□ 0.28
ATG4AQ8WYN0 AC096734.2-201ENST00000562054 433 ntBASIC16.83■□□□□ 0.28
ATG4AQ8WYN0 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC16.83■□□□□ 0.28
ATG4AQ8WYN0 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC16.83■□□□□ 0.28
ATG4AQ8WYN0 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
ATG4AQ8WYN0 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC16.83■□□□□ 0.28
ATG4AQ8WYN0 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
ATG4AQ8WYN0 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
ATG4AQ8WYN0 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
ATG4AQ8WYN0 AC022532.1-201ENST00000624563 1728 ntBASIC16.83■□□□□ 0.28
ATG4AQ8WYN0 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
ATG4AQ8WYN0 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC16.83■□□□□ 0.28
ATG4AQ8WYN0 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
ATG4AQ8WYN0 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
ATG4AQ8WYN0 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC16.82■□□□□ 0.28
ATG4AQ8WYN0 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
ATG4AQ8WYN0 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
ATG4AQ8WYN0 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
ATG4AQ8WYN0 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC16.82■□□□□ 0.28
ATG4AQ8WYN0 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ATG4AQ8WYN0 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ATG4AQ8WYN0 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC16.82■□□□□ 0.28
ATG4AQ8WYN0 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ATG4AQ8WYN0 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC16.82■□□□□ 0.28
ATG4AQ8WYN0 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ATG4AQ8WYN0 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ATG4AQ8WYN0 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
ATG4AQ8WYN0 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
ATG4AQ8WYN0 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC16.82■□□□□ 0.28
ATG4AQ8WYN0 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
ATG4AQ8WYN0 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
ATG4AQ8WYN0 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ATG4AQ8WYN0 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC16.82■□□□□ 0.28
ATG4AQ8WYN0 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ATG4AQ8WYN0 HAUS4P1-201ENST00000406739 1145 ntBASIC16.82■□□□□ 0.28
ATG4AQ8WYN0 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
ATG4AQ8WYN0 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
ATG4AQ8WYN0 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC16.82■□□□□ 0.28
ATG4AQ8WYN0 CFL1-202ENST00000524553 860 ntTSL 2 BASIC16.82■□□□□ 0.28
ATG4AQ8WYN0 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC16.82■□□□□ 0.28
ATG4AQ8WYN0 THTPA-204ENST00000554970 569 ntTSL 4 BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 69.2 ms