Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
NKX2-3Q8TAU0 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
NKX2-3Q8TAU0 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
NKX2-3Q8TAU0 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
NKX2-3Q8TAU0 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
NKX2-3Q8TAU0 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC19.08■□□□□ 0.65
NKX2-3Q8TAU0 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
NKX2-3Q8TAU0 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC19.08■□□□□ 0.65
NKX2-3Q8TAU0 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
NKX2-3Q8TAU0 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
NKX2-3Q8TAU0 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
NKX2-3Q8TAU0 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC19.08■□□□□ 0.64
NKX2-3Q8TAU0 Six3os1_5.1-201ENST00000611000 271 ntBASIC19.08■□□□□ 0.64
NKX2-3Q8TAU0 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
NKX2-3Q8TAU0 AL138828.2-201ENST00000615812 383 ntBASIC19.08■□□□□ 0.64
NKX2-3Q8TAU0 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC19.08■□□□□ 0.64
NKX2-3Q8TAU0 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
NKX2-3Q8TAU0 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC19.08■□□□□ 0.64
NKX2-3Q8TAU0 AC134407.2-201ENST00000625089 1978 ntBASIC19.08■□□□□ 0.64
NKX2-3Q8TAU0 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
NKX2-3Q8TAU0 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
NKX2-3Q8TAU0 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC19.07■□□□□ 0.64
NKX2-3Q8TAU0 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
NKX2-3Q8TAU0 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
NKX2-3Q8TAU0 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
NKX2-3Q8TAU0 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
NKX2-3Q8TAU0 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
NKX2-3Q8TAU0 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC19.07■□□□□ 0.64
NKX2-3Q8TAU0 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
NKX2-3Q8TAU0 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
NKX2-3Q8TAU0 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
NKX2-3Q8TAU0 AC018892.3-201ENST00000623986 2499 ntBASIC19.07■□□□□ 0.64
NKX2-3Q8TAU0 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
NKX2-3Q8TAU0 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
NKX2-3Q8TAU0 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC19.07■□□□□ 0.64
NKX2-3Q8TAU0 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
NKX2-3Q8TAU0 RBM39-205ENST00000397370 612 ntTSL 2 BASIC19.07■□□□□ 0.64
NKX2-3Q8TAU0 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC19.07■□□□□ 0.64
NKX2-3Q8TAU0 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC19.07■□□□□ 0.64
NKX2-3Q8TAU0 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
NKX2-3Q8TAU0 NAA38-207ENST00000576861 556 ntTSL 3 BASIC19.07■□□□□ 0.64
NKX2-3Q8TAU0 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC19.07■□□□□ 0.64
NKX2-3Q8TAU0 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
NKX2-3Q8TAU0 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
NKX2-3Q8TAU0 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC19.07■□□□□ 0.64
NKX2-3Q8TAU0 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
NKX2-3Q8TAU0 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
NKX2-3Q8TAU0 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
NKX2-3Q8TAU0 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
NKX2-3Q8TAU0 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
NKX2-3Q8TAU0 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC19.06■□□□□ 0.64
NKX2-3Q8TAU0 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC19.06■□□□□ 0.64
NKX2-3Q8TAU0 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
NKX2-3Q8TAU0 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC19.06■□□□□ 0.64
NKX2-3Q8TAU0 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
NKX2-3Q8TAU0 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
NKX2-3Q8TAU0 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC19.06■□□□□ 0.64
NKX2-3Q8TAU0 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
NKX2-3Q8TAU0 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
NKX2-3Q8TAU0 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC19.06■□□□□ 0.64
NKX2-3Q8TAU0 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC19.06■□□□□ 0.64
NKX2-3Q8TAU0 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC19.06■□□□□ 0.64
NKX2-3Q8TAU0 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC19.06■□□□□ 0.64
NKX2-3Q8TAU0 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
NKX2-3Q8TAU0 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
NKX2-3Q8TAU0 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
NKX2-3Q8TAU0 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC19.06■□□□□ 0.64
NKX2-3Q8TAU0 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
NKX2-3Q8TAU0 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
NKX2-3Q8TAU0 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC19.06■□□□□ 0.64
NKX2-3Q8TAU0 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC19.06■□□□□ 0.64
NKX2-3Q8TAU0 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
NKX2-3Q8TAU0 LITAF-210ENST00000571976 548 ntTSL 2 BASIC19.06■□□□□ 0.64
NKX2-3Q8TAU0 LITAF-214ENST00000574703 486 ntTSL 2 BASIC19.06■□□□□ 0.64
NKX2-3Q8TAU0 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
NKX2-3Q8TAU0 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC19.06■□□□□ 0.64
NKX2-3Q8TAU0 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC19.06■□□□□ 0.64
NKX2-3Q8TAU0 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
NKX2-3Q8TAU0 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
NKX2-3Q8TAU0 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
NKX2-3Q8TAU0 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
NKX2-3Q8TAU0 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
NKX2-3Q8TAU0 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC19.05■□□□□ 0.64
NKX2-3Q8TAU0 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
NKX2-3Q8TAU0 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC19.05■□□□□ 0.64
NKX2-3Q8TAU0 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
NKX2-3Q8TAU0 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
NKX2-3Q8TAU0 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
NKX2-3Q8TAU0 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC19.05■□□□□ 0.64
NKX2-3Q8TAU0 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
NKX2-3Q8TAU0 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
NKX2-3Q8TAU0 MIR1909-201ENST00000411312 80 ntBASIC19.05■□□□□ 0.64
NKX2-3Q8TAU0 AL080243.2-201ENST00000418783 582 ntBASIC19.05■□□□□ 0.64
NKX2-3Q8TAU0 HIST3H2BA-201ENST00000436555 524 ntBASIC19.05■□□□□ 0.64
NKX2-3Q8TAU0 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC19.05■□□□□ 0.64
NKX2-3Q8TAU0 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
NKX2-3Q8TAU0 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC19.05■□□□□ 0.64
NKX2-3Q8TAU0 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC19.05■□□□□ 0.64
NKX2-3Q8TAU0 ACA64.2-201ENST00000459014 129 ntBASIC19.05■□□□□ 0.64
NKX2-3Q8TAU0 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 57.5 ms