Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 MYO16-203ENST00000357550 6779 ntAPPRIS P3 TSL 1 (best) BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 AL590644.1-201ENST00000412427 4676 ntTSL 4 BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 CHRFAM7A-201ENST00000299847 6220 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 CCT8L2-201ENST00000359963 2060 ntAPPRIS P1 BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 USP19-206ENST00000417901 4706 ntAPPRIS ALT2 TSL 1 (best) BASIC10.08□□□□□ -0.8
LINC00643Q86TS7 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 MYO16-202ENST00000356711 6874 ntAPPRIS P3 TSL 1 (best) BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 ZEB1-AS1-208ENST00000607166 2503 ntBASIC10.07□□□□□ -0.8
LINC00643Q86TS7 TNK1-207ENST00000576812 3023 ntAPPRIS ALT1 TSL 1 (best) BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 AGL-203ENST00000361915 7368 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 HES2-201ENST00000377834 4262 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 LINC00865-202ENST00000448963 4272 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 CTBP1-AS-201ENST00000625256 3886 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 STK26-202ENST00000394334 3288 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 FZD6-206ENST00000523739 2774 ntTSL 2 BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 EXOC3-201ENST00000315013 2682 ntAPPRIS P1 TSL 2 BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 RPS6KA2-204ENST00000481261 2297 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 PCGF2-202ENST00000611883 2179 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 GGT1-206ENST00000404223 952 ntTSL 2 BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 ALPK3-201ENST00000258888 10917 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 DLX1-203ENST00000361725 2640 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 MECOM-206ENST00000464456 5732 ntAPPRIS ALT2 TSL 1 (best) BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 SLC38A1-204ENST00000546893 2332 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 SDC1-202ENST00000381150 3291 ntAPPRIS P1 TSL 5 BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 MAN2B1-203ENST00000456935 3184 ntAPPRIS P3 TSL 1 (best) BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 LPCAT2-201ENST00000262134 5391 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 PC-204ENST00000524491 1714 ntTSL 2 BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 ZYG11A-201ENST00000371528 4469 ntAPPRIS P1 TSL 5 BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 TMX4-201ENST00000246024 6169 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 CAMKV-209ENST00000477224 3314 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 MAP7-201ENST00000354570 4152 ntAPPRIS P3 TSL 1 (best) BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC10.07□□□□□ -0.8
LINC00643Q86TS7 AC004899.2-201ENST00000622993 3860 ntBASIC10.07□□□□□ -0.8
LINC00643Q86TS7 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 SMTN-203ENST00000358743 3198 ntAPPRIS P4 TSL 2 BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 NRXN1-210ENST00000406316 9375 ntAPPRIS P3 TSL 5 BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 KDELR1-201ENST00000330720 1557 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 MEAF6-203ENST00000373074 2005 ntTSL 2 BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 WDFY1-201ENST00000233055 4660 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 RASA4CP-201ENST00000424092 1398 ntBASIC10.06□□□□□ -0.8
LINC00643Q86TS7 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 CCDC117-205ENST00000448492 3937 ntTSL 2 BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC10.06□□□□□ -0.8
LINC00643Q86TS7 AL023284.2-201ENST00000405850 579 ntBASIC10.06□□□□□ -0.8
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms