Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LIG3P49916 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LIG3P49916 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
LIG3P49916 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
LIG3P49916 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
LIG3P49916 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
LIG3P49916 BEX3-201ENST00000361298 921 ntTSL 2 BASIC17.16■□□□□ 0.34
LIG3P49916 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
LIG3P49916 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
LIG3P49916 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC17.16■□□□□ 0.34
LIG3P49916 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
LIG3P49916 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC17.16■□□□□ 0.34
LIG3P49916 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LIG3P49916 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
LIG3P49916 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
LIG3P49916 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LIG3P49916 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LIG3P49916 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
LIG3P49916 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
LIG3P49916 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC17.16■□□□□ 0.34
LIG3P49916 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC17.16■□□□□ 0.34
LIG3P49916 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
LIG3P49916 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LIG3P49916 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LIG3P49916 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LIG3P49916 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC17.16■□□□□ 0.34
LIG3P49916 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
LIG3P49916 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
LIG3P49916 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
LIG3P49916 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LIG3P49916 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LIG3P49916 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LIG3P49916 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
LIG3P49916 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC17.15■□□□□ 0.34
LIG3P49916 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LIG3P49916 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LIG3P49916 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC17.15■□□□□ 0.34
LIG3P49916 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LIG3P49916 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
LIG3P49916 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
LIG3P49916 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC17.15■□□□□ 0.34
LIG3P49916 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
LIG3P49916 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
LIG3P49916 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LIG3P49916 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC17.15■□□□□ 0.34
LIG3P49916 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
LIG3P49916 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC17.15■□□□□ 0.34
LIG3P49916 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC17.15■□□□□ 0.34
LIG3P49916 PGAM5P1-201ENST00000518923 814 ntBASIC17.15■□□□□ 0.34
LIG3P49916 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC17.15■□□□□ 0.34
LIG3P49916 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC17.15■□□□□ 0.34
LIG3P49916 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LIG3P49916 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC17.15■□□□□ 0.34
LIG3P49916 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC17.15■□□□□ 0.34
LIG3P49916 AC022532.1-201ENST00000624563 1728 ntBASIC17.15■□□□□ 0.34
LIG3P49916 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LIG3P49916 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LIG3P49916 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
LIG3P49916 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LIG3P49916 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC17.15■□□□□ 0.34
LIG3P49916 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC17.15■□□□□ 0.34
LIG3P49916 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
LIG3P49916 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LIG3P49916 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC17.14■□□□□ 0.34
LIG3P49916 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
LIG3P49916 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
LIG3P49916 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LIG3P49916 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LIG3P49916 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LIG3P49916 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LIG3P49916 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC17.14■□□□□ 0.33
LIG3P49916 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LIG3P49916 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC17.14■□□□□ 0.33
LIG3P49916 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LIG3P49916 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC17.14■□□□□ 0.33
LIG3P49916 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LIG3P49916 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC17.14■□□□□ 0.33
LIG3P49916 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC17.14■□□□□ 0.33
LIG3P49916 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC17.14■□□□□ 0.33
LIG3P49916 KRT18P2-201ENST00000447938 1258 ntBASIC17.14■□□□□ 0.33
LIG3P49916 NMU-202ENST00000505262 693 ntTSL 3 BASIC17.14■□□□□ 0.33
LIG3P49916 AC010654.1-201ENST00000615722 808 ntBASIC17.14■□□□□ 0.33
LIG3P49916 AC023511.2-201ENST00000618803 211 ntBASIC17.14■□□□□ 0.33
LIG3P49916 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LIG3P49916 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LIG3P49916 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
LIG3P49916 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
LIG3P49916 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LIG3P49916 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
LIG3P49916 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LIG3P49916 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC17.14■□□□□ 0.33
LIG3P49916 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC17.14■□□□□ 0.33
LIG3P49916 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LIG3P49916 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
LIG3P49916 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
LIG3P49916 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LIG3P49916 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC17.14■□□□□ 0.33
LIG3P49916 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC17.13■□□□□ 0.33
LIG3P49916 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LIG3P49916 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms