Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
HOXA1P49639 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC13.57□□□□□ -0.24
HOXA1P49639 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
HOXA1P49639 FUOM-202ENST00000368551 628 ntTSL 3 BASIC13.57□□□□□ -0.24
HOXA1P49639 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC13.57□□□□□ -0.24
HOXA1P49639 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
HOXA1P49639 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC13.57□□□□□ -0.24
HOXA1P49639 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC13.57□□□□□ -0.24
HOXA1P49639 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
HOXA1P49639 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC13.57□□□□□ -0.24
HOXA1P49639 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC13.57□□□□□ -0.24
HOXA1P49639 POLL-217ENST00000628479 1953 ntTSL 5 BASIC13.57□□□□□ -0.24
HOXA1P49639 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC13.57□□□□□ -0.24
HOXA1P49639 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC13.57□□□□□ -0.24
HOXA1P49639 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
HOXA1P49639 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC13.57□□□□□ -0.24
HOXA1P49639 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC13.57□□□□□ -0.24
HOXA1P49639 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
HOXA1P49639 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
HOXA1P49639 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC13.57□□□□□ -0.24
HOXA1P49639 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
HOXA1P49639 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
HOXA1P49639 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
HOXA1P49639 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC13.57□□□□□ -0.24
HOXA1P49639 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
HOXA1P49639 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
HOXA1P49639 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
HOXA1P49639 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC13.57□□□□□ -0.24
HOXA1P49639 AC041040.2-201ENST00000622926 2899 ntBASIC13.57□□□□□ -0.24
HOXA1P49639 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
HOXA1P49639 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
HOXA1P49639 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HOXA1P49639 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HOXA1P49639 INTS4P1-201ENST00000438455 1935 ntBASIC13.56□□□□□ -0.24
HOXA1P49639 TOR1AIP1-201ENST00000271583 3044 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
HOXA1P49639 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HOXA1P49639 CFAP65-203ENST00000409865 2769 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
HOXA1P49639 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC13.56□□□□□ -0.24
HOXA1P49639 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC13.56□□□□□ -0.24
HOXA1P49639 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
HOXA1P49639 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC13.56□□□□□ -0.24
HOXA1P49639 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HOXA1P49639 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC13.56□□□□□ -0.24
HOXA1P49639 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
HOXA1P49639 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
HOXA1P49639 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
HOXA1P49639 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
HOXA1P49639 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC13.56□□□□□ -0.24
HOXA1P49639 CCS-201ENST00000310190 942 ntTSL 5 BASIC13.56□□□□□ -0.24
HOXA1P49639 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HOXA1P49639 TMPOP1-202ENST00000424642 1267 ntBASIC13.56□□□□□ -0.24
HOXA1P49639 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC13.56□□□□□ -0.24
HOXA1P49639 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC13.56□□□□□ -0.24
HOXA1P49639 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HOXA1P49639 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC13.56□□□□□ -0.24
HOXA1P49639 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC13.56□□□□□ -0.24
HOXA1P49639 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
HOXA1P49639 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
HOXA1P49639 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC13.56□□□□□ -0.24
HOXA1P49639 AL121956.5-201ENST00000625261 221 ntBASIC13.56□□□□□ -0.24
HOXA1P49639 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HOXA1P49639 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC13.56□□□□□ -0.24
HOXA1P49639 PMPCAP1-201ENST00000508114 1576 ntBASIC13.56□□□□□ -0.24
HOXA1P49639 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
HOXA1P49639 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC13.56□□□□□ -0.24
HOXA1P49639 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
HOXA1P49639 SLC29A1-201ENST00000371708 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HOXA1P49639 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
HOXA1P49639 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC13.56□□□□□ -0.24
HOXA1P49639 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC13.56□□□□□ -0.24
HOXA1P49639 LINC00895-201ENST00000629028 1637 ntBASIC13.56□□□□□ -0.24
HOXA1P49639 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HOXA1P49639 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
HOXA1P49639 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
HOXA1P49639 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HOXA1P49639 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HOXA1P49639 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HOXA1P49639 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HOXA1P49639 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HOXA1P49639 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HOXA1P49639 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
HOXA1P49639 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
HOXA1P49639 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
HOXA1P49639 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
HOXA1P49639 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HOXA1P49639 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC13.55□□□□□ -0.24
HOXA1P49639 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
HOXA1P49639 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HOXA1P49639 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
HOXA1P49639 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HOXA1P49639 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
HOXA1P49639 NSUN5P1-202ENST00000421140 1535 ntBASIC13.55□□□□□ -0.24
HOXA1P49639 NSUN5P2-203ENST00000457352 1529 ntBASIC13.55□□□□□ -0.24
HOXA1P49639 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC13.55□□□□□ -0.24
HOXA1P49639 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC13.55□□□□□ -0.24
HOXA1P49639 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HOXA1P49639 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
HOXA1P49639 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HOXA1P49639 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
HOXA1P49639 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms