Protein–RNA interactions for Protein: P35453

HOXD13, Homeobox protein Hox-D13, humanhuman

Predictions only

Length 343 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD13P35453 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
HOXD13P35453 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC17.63■□□□□ 0.41
HOXD13P35453 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
HOXD13P35453 AP003680.1-201ENST00000598970 3660 ntBASIC17.62■□□□□ 0.41
HOXD13P35453 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
HOXD13P35453 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
HOXD13P35453 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
HOXD13P35453 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
HOXD13P35453 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
HOXD13P35453 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC17.62■□□□□ 0.41
HOXD13P35453 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
HOXD13P35453 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
HOXD13P35453 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HOXD13P35453 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC17.62■□□□□ 0.41
HOXD13P35453 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC17.62■□□□□ 0.41
HOXD13P35453 URGCP-206ENST00000446958 365 ntTSL 2 BASIC17.62■□□□□ 0.41
HOXD13P35453 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC17.62■□□□□ 0.41
HOXD13P35453 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC17.62■□□□□ 0.41
HOXD13P35453 SLBP-205ENST00000488267 987 ntTSL 2 BASIC17.62■□□□□ 0.41
HOXD13P35453 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC17.62■□□□□ 0.41
HOXD13P35453 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC17.62■□□□□ 0.41
HOXD13P35453 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC17.62■□□□□ 0.41
HOXD13P35453 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC17.62■□□□□ 0.41
HOXD13P35453 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HOXD13P35453 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC17.62■□□□□ 0.41
HOXD13P35453 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC17.62■□□□□ 0.41
HOXD13P35453 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
HOXD13P35453 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC17.62■□□□□ 0.41
HOXD13P35453 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HOXD13P35453 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
HOXD13P35453 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HOXD13P35453 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC17.61■□□□□ 0.41
HOXD13P35453 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HOXD13P35453 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HOXD13P35453 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC17.61■□□□□ 0.41
HOXD13P35453 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
HOXD13P35453 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HOXD13P35453 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
HOXD13P35453 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HOXD13P35453 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC17.61■□□□□ 0.41
HOXD13P35453 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
HOXD13P35453 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
HOXD13P35453 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HOXD13P35453 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
HOXD13P35453 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HOXD13P35453 KLK8-202ENST00000320838 456 ntTSL 5 BASIC17.61■□□□□ 0.41
HOXD13P35453 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HOXD13P35453 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC17.61■□□□□ 0.41
HOXD13P35453 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HOXD13P35453 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC17.61■□□□□ 0.41
HOXD13P35453 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
HOXD13P35453 HIST3H2BA-201ENST00000436555 524 ntBASIC17.61■□□□□ 0.41
HOXD13P35453 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC17.61■□□□□ 0.41
HOXD13P35453 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC17.61■□□□□ 0.41
HOXD13P35453 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC17.61■□□□□ 0.41
HOXD13P35453 PPP6R2P1-201ENST00000450880 1275 ntBASIC17.61■□□□□ 0.41
HOXD13P35453 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HOXD13P35453 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HOXD13P35453 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC17.61■□□□□ 0.41
HOXD13P35453 LITAF-210ENST00000571976 548 ntTSL 2 BASIC17.61■□□□□ 0.41
HOXD13P35453 LITAF-214ENST00000574703 486 ntTSL 2 BASIC17.61■□□□□ 0.41
HOXD13P35453 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC17.61■□□□□ 0.41
HOXD13P35453 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HOXD13P35453 RN7SL828P-201ENST00000607615 303 ntBASIC17.61■□□□□ 0.41
HOXD13P35453 MIR6080-201ENST00000617359 66 ntBASIC17.61■□□□□ 0.41
HOXD13P35453 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
HOXD13P35453 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HOXD13P35453 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.61■□□□□ 0.41
HOXD13P35453 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HOXD13P35453 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HOXD13P35453 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
HOXD13P35453 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HOXD13P35453 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HOXD13P35453 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC17.6■□□□□ 0.41
HOXD13P35453 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
HOXD13P35453 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HOXD13P35453 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC17.6■□□□□ 0.41
HOXD13P35453 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HOXD13P35453 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HOXD13P35453 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HOXD13P35453 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
HOXD13P35453 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HOXD13P35453 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
HOXD13P35453 SPDYE17-201ENST00000412399 783 ntBASIC17.6■□□□□ 0.41
HOXD13P35453 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC17.6■□□□□ 0.41
HOXD13P35453 AL353705.2-201ENST00000428243 662 ntBASIC17.6■□□□□ 0.41
HOXD13P35453 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC17.6■□□□□ 0.41
HOXD13P35453 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC17.6■□□□□ 0.41
HOXD13P35453 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HOXD13P35453 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HOXD13P35453 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HOXD13P35453 VPS29-207ENST00000549970 818 ntTSL 3 BASIC17.6■□□□□ 0.41
HOXD13P35453 RPL28-205ENST00000558131 444 ntTSL 5 BASIC17.6■□□□□ 0.41
HOXD13P35453 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC17.6■□□□□ 0.41
HOXD13P35453 MIR4313-201ENST00000580760 101 ntBASIC17.6■□□□□ 0.41
HOXD13P35453 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HOXD13P35453 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HOXD13P35453 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC17.6■□□□□ 0.41
HOXD13P35453 COQ4-205ENST00000609948 956 ntTSL 2 BASIC17.6■□□□□ 0.41
HOXD13P35453 Z92544.3-201ENST00000624747 417 ntBASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms