Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC010328.2-201ENST00000597698 1111 ntBASIC15.31■□□□□ 0.04
COL5A1P20908 METTL26-214ENST00000614890 801 ntTSL 3 BASIC15.31■□□□□ 0.04
COL5A1P20908 HADH-212ENST00000638621 741 ntTSL 5 BASIC15.31■□□□□ 0.04
COL5A1P20908 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC15.31■□□□□ 0.04
COL5A1P20908 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL5A1P20908 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC15.31■□□□□ 0.04
COL5A1P20908 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC15.31■□□□□ 0.04
COL5A1P20908 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL5A1P20908 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC15.31■□□□□ 0.04
COL5A1P20908 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL5A1P20908 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL5A1P20908 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL5A1P20908 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
COL5A1P20908 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL5A1P20908 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC15.3■□□□□ 0.04
COL5A1P20908 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL5A1P20908 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL5A1P20908 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL5A1P20908 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL5A1P20908 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL5A1P20908 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC15.3■□□□□ 0.04
COL5A1P20908 KRT18P43-201ENST00000469825 1281 ntBASIC15.3■□□□□ 0.04
COL5A1P20908 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
COL5A1P20908 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL5A1P20908 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL5A1P20908 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL5A1P20908 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL5A1P20908 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL5A1P20908 BNIP3P1-202ENST00000550043 1585 ntBASIC15.3■□□□□ 0.04
COL5A1P20908 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC15.3■□□□□ 0.04
COL5A1P20908 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC15.3■□□□□ 0.04
COL5A1P20908 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL5A1P20908 PCDHA12-202ENST00000613593 2588 ntBASIC15.3■□□□□ 0.04
COL5A1P20908 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC15.3■□□□□ 0.04
COL5A1P20908 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL5A1P20908 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL5A1P20908 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC15.29■□□□□ 0.04
COL5A1P20908 ME2P1-201ENST00000426028 1970 ntBASIC15.29■□□□□ 0.04
COL5A1P20908 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
COL5A1P20908 NKILA-202ENST00000614771 2598 ntBASIC15.29■□□□□ 0.04
COL5A1P20908 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
COL5A1P20908 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
COL5A1P20908 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL5A1P20908 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
COL5A1P20908 VDAC1P7-201ENST00000462417 847 ntBASIC15.29■□□□□ 0.04
COL5A1P20908 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC15.29■□□□□ 0.04
COL5A1P20908 C2orf69P2-201ENST00000562032 1123 ntBASIC15.29■□□□□ 0.04
COL5A1P20908 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC15.29■□□□□ 0.04
COL5A1P20908 CLUHP6-201ENST00000580789 941 ntBASIC15.29■□□□□ 0.04
COL5A1P20908 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC15.29■□□□□ 0.04
COL5A1P20908 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC15.29■□□□□ 0.04
COL5A1P20908 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
COL5A1P20908 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC15.29■□□□□ 0.04
COL5A1P20908 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
COL5A1P20908 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC15.29■□□□□ 0.04
COL5A1P20908 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL5A1P20908 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC15.29■□□□□ 0.04
COL5A1P20908 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL5A1P20908 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL5A1P20908 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
COL5A1P20908 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL5A1P20908 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC15.29■□□□□ 0.04
COL5A1P20908 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC15.29■□□□□ 0.04
COL5A1P20908 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC15.29■□□□□ 0.04
COL5A1P20908 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
COL5A1P20908 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL5A1P20908 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL5A1P20908 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL5A1P20908 BRF1-202ENST00000379932 884 ntTSL 5 BASIC15.29■□□□□ 0.04
COL5A1P20908 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
COL5A1P20908 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC15.29■□□□□ 0.04
COL5A1P20908 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC15.29■□□□□ 0.04
COL5A1P20908 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC15.29■□□□□ 0.04
COL5A1P20908 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC15.29■□□□□ 0.04
COL5A1P20908 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC15.29■□□□□ 0.04
COL5A1P20908 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC15.29■□□□□ 0.04
COL5A1P20908 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC15.29■□□□□ 0.04
COL5A1P20908 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
COL5A1P20908 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC15.29■□□□□ 0.04
COL5A1P20908 ATF5-205ENST00000600336 682 ntTSL 2 BASIC15.29■□□□□ 0.04
COL5A1P20908 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
COL5A1P20908 AC107373.2-201ENST00000607735 490 ntBASIC15.29■□□□□ 0.04
COL5A1P20908 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC15.29■□□□□ 0.04
COL5A1P20908 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL5A1P20908 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL5A1P20908 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC15.28■□□□□ 0.04
COL5A1P20908 GCK-202ENST00000345378 2421 ntTSL 2 BASIC15.28■□□□□ 0.04
COL5A1P20908 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
COL5A1P20908 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL5A1P20908 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC15.28■□□□□ 0.04
COL5A1P20908 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC15.28■□□□□ 0.04
COL5A1P20908 LOX-206ENST00000639739 1626 ntTSL 5 BASIC15.28■□□□□ 0.04
COL5A1P20908 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL5A1P20908 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL5A1P20908 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC15.28■□□□□ 0.04
COL5A1P20908 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL5A1P20908 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL5A1P20908 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL5A1P20908 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL5A1P20908 AC009053.2-201ENST00000563701 2365 ntBASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms