Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 AC211429.1-201ENST00000415277 523 ntBASIC12.27□□□□□ -0.45
HLA-DQA1P01909 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC12.27□□□□□ -0.45
HLA-DQA1P01909 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC12.27□□□□□ -0.45
HLA-DQA1P01909 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC12.27□□□□□ -0.45
HLA-DQA1P01909 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC12.27□□□□□ -0.45
HLA-DQA1P01909 AC005324.3-201ENST00000455584 5514 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.45
HLA-DQA1P01909 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC12.27□□□□□ -0.45
HLA-DQA1P01909 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
HLA-DQA1P01909 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC12.27□□□□□ -0.45
HLA-DQA1P01909 STK19B-204ENST00000512515 211 ntBASIC12.27□□□□□ -0.45
HLA-DQA1P01909 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
HLA-DQA1P01909 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
HLA-DQA1P01909 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
HLA-DQA1P01909 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
HLA-DQA1P01909 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC12.27□□□□□ -0.45
HLA-DQA1P01909 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC12.27□□□□□ -0.45
HLA-DQA1P01909 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
HLA-DQA1P01909 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
HLA-DQA1P01909 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
HLA-DQA1P01909 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
HLA-DQA1P01909 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
HLA-DQA1P01909 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
HLA-DQA1P01909 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC12.27□□□□□ -0.45
HLA-DQA1P01909 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC12.27□□□□□ -0.45
HLA-DQA1P01909 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
HLA-DQA1P01909 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC12.27□□□□□ -0.45
HLA-DQA1P01909 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
HLA-DQA1P01909 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
HLA-DQA1P01909 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.45
HLA-DQA1P01909 ARHGAP23P1-201ENST00000562773 1937 ntBASIC12.27□□□□□ -0.45
HLA-DQA1P01909 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
HLA-DQA1P01909 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
HLA-DQA1P01909 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
HLA-DQA1P01909 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
HLA-DQA1P01909 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
HLA-DQA1P01909 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
HLA-DQA1P01909 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC12.27□□□□□ -0.45
HLA-DQA1P01909 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
HLA-DQA1P01909 AL031731.1-201ENST00000642131 2094 ntBASIC12.26□□□□□ -0.45
HLA-DQA1P01909 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
HLA-DQA1P01909 AL049757.1-201ENST00000616842 1596 ntBASIC12.26□□□□□ -0.45
HLA-DQA1P01909 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC12.26□□□□□ -0.45
HLA-DQA1P01909 AMT-204ENST00000427987 1646 ntTSL 5 BASIC12.26□□□□□ -0.45
HLA-DQA1P01909 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC12.26□□□□□ -0.45
HLA-DQA1P01909 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
HLA-DQA1P01909 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
HLA-DQA1P01909 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
HLA-DQA1P01909 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
HLA-DQA1P01909 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
HLA-DQA1P01909 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
HLA-DQA1P01909 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC12.26□□□□□ -0.45
HLA-DQA1P01909 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
HLA-DQA1P01909 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC12.26□□□□□ -0.45
HLA-DQA1P01909 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
HLA-DQA1P01909 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
HLA-DQA1P01909 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
HLA-DQA1P01909 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
HLA-DQA1P01909 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
HLA-DQA1P01909 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC12.26□□□□□ -0.45
HLA-DQA1P01909 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
HLA-DQA1P01909 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC12.26□□□□□ -0.45
HLA-DQA1P01909 PCGF3-213ENST00000620529 1899 ntBASIC12.26□□□□□ -0.45
HLA-DQA1P01909 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC12.26□□□□□ -0.45
HLA-DQA1P01909 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC12.26□□□□□ -0.45
HLA-DQA1P01909 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
HLA-DQA1P01909 TERF1P1-201ENST00000311003 1181 ntBASIC12.26□□□□□ -0.45
HLA-DQA1P01909 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC12.26□□□□□ -0.45
HLA-DQA1P01909 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC12.26□□□□□ -0.45
HLA-DQA1P01909 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
HLA-DQA1P01909 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC12.26□□□□□ -0.45
HLA-DQA1P01909 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC12.26□□□□□ -0.45
HLA-DQA1P01909 AC122714.2-201ENST00000502787 707 ntBASIC12.26□□□□□ -0.45
HLA-DQA1P01909 AC034232.1-201ENST00000506026 1064 ntBASIC12.26□□□□□ -0.45
HLA-DQA1P01909 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC12.26□□□□□ -0.45
HLA-DQA1P01909 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC12.26□□□□□ -0.45
HLA-DQA1P01909 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC12.26□□□□□ -0.45
HLA-DQA1P01909 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC12.26□□□□□ -0.45
HLA-DQA1P01909 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
HLA-DQA1P01909 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC12.26□□□□□ -0.45
HLA-DQA1P01909 VGLL3-202ENST00000398399 10400 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
HLA-DQA1P01909 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC12.26□□□□□ -0.45
HLA-DQA1P01909 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
HLA-DQA1P01909 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
HLA-DQA1P01909 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
HLA-DQA1P01909 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
HLA-DQA1P01909 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC12.26□□□□□ -0.45
HLA-DQA1P01909 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
HLA-DQA1P01909 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
HLA-DQA1P01909 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC12.26□□□□□ -0.45
HLA-DQA1P01909 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
HLA-DQA1P01909 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
HLA-DQA1P01909 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC12.26□□□□□ -0.45
HLA-DQA1P01909 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
HLA-DQA1P01909 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
HLA-DQA1P01909 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HLA-DQA1P01909 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HLA-DQA1P01909 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC12.25□□□□□ -0.45
HLA-DQA1P01909 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC12.25□□□□□ -0.45
HLA-DQA1P01909 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HLA-DQA1P01909 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms