Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC22.63■■□□□ 1.21
MSH5O43196 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC22.63■■□□□ 1.21
MSH5O43196 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
MSH5O43196 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC22.63■■□□□ 1.21
MSH5O43196 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC22.63■■□□□ 1.21
MSH5O43196 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
MSH5O43196 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
MSH5O43196 CCL2-201ENST00000225831 741 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
MSH5O43196 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
MSH5O43196 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC22.63■■□□□ 1.21
MSH5O43196 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC22.63■■□□□ 1.21
MSH5O43196 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
MSH5O43196 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC22.63■■□□□ 1.21
MSH5O43196 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC22.63■■□□□ 1.21
MSH5O43196 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC22.63■■□□□ 1.21
MSH5O43196 LINC01830-201ENST00000450551 636 ntTSL 5 BASIC22.63■■□□□ 1.21
MSH5O43196 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC22.63■■□□□ 1.21
MSH5O43196 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC22.63■■□□□ 1.21
MSH5O43196 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC22.63■■□□□ 1.21
MSH5O43196 CCDC58-205ENST00000479899 545 ntTSL 3 BASIC22.63■■□□□ 1.21
MSH5O43196 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC22.63■■□□□ 1.21
MSH5O43196 AC021146.5-201ENST00000503544 545 ntBASIC22.63■■□□□ 1.21
MSH5O43196 AC110775.1-201ENST00000513721 462 ntBASIC22.63■■□□□ 1.21
MSH5O43196 SNORA48.9-201ENST00000516419 162 ntBASIC22.63■■□□□ 1.21
MSH5O43196 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC22.63■■□□□ 1.21
MSH5O43196 DUXA-201ENST00000554048 1006 ntAPPRIS P1 TSL 3 BASIC22.63■■□□□ 1.21
MSH5O43196 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC22.63■■□□□ 1.21
MSH5O43196 RPP40P2-201ENST00000603596 712 ntBASIC22.63■■□□□ 1.21
MSH5O43196 AC097504.2-201ENST00000608088 454 ntBASIC22.63■■□□□ 1.21
MSH5O43196 AP001596.2-201ENST00000608410 312 ntBASIC22.63■■□□□ 1.21
MSH5O43196 AL589182.2-201ENST00000619332 1049 ntBASIC22.63■■□□□ 1.21
MSH5O43196 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC22.63■■□□□ 1.21
MSH5O43196 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC22.63■■□□□ 1.21
MSH5O43196 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
MSH5O43196 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
MSH5O43196 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
MSH5O43196 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
MSH5O43196 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
MSH5O43196 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
MSH5O43196 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
MSH5O43196 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
MSH5O43196 BANP-204ENST00000393208 2283 ntTSL 2 BASIC22.62■■□□□ 1.21
MSH5O43196 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
MSH5O43196 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC22.62■■□□□ 1.21
MSH5O43196 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
MSH5O43196 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC22.62■■□□□ 1.21
MSH5O43196 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC22.62■■□□□ 1.21
MSH5O43196 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC22.62■■□□□ 1.21
MSH5O43196 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
MSH5O43196 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
MSH5O43196 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC22.62■■□□□ 1.21
MSH5O43196 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
MSH5O43196 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
MSH5O43196 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
MSH5O43196 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
MSH5O43196 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC22.62■■□□□ 1.21
MSH5O43196 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
MSH5O43196 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC22.62■■□□□ 1.21
MSH5O43196 XAGE2-201ENST00000286049 618 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
MSH5O43196 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC22.62■■□□□ 1.21
MSH5O43196 AC245060.4-201ENST00000413293 1121 ntBASIC22.62■■□□□ 1.21
MSH5O43196 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC22.62■■□□□ 1.21
MSH5O43196 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC22.62■■□□□ 1.21
MSH5O43196 AL512785.1-201ENST00000447899 517 ntTSL 3 BASIC22.62■■□□□ 1.21
MSH5O43196 AL031432.1-201ENST00000455902 988 ntTSL 3 BASIC22.62■■□□□ 1.21
MSH5O43196 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC22.62■■□□□ 1.21
MSH5O43196 SCARNA1-201ENST00000517138 166 ntBASIC22.62■■□□□ 1.21
MSH5O43196 SDHD-205ENST00000528048 905 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
MSH5O43196 BOLA3P1-201ENST00000530713 355 ntBASIC22.62■■□□□ 1.21
MSH5O43196 AC006511.5-202ENST00000546339 1198 ntTSL 5 BASIC22.62■■□□□ 1.21
MSH5O43196 CD63-210ENST00000550776 870 ntTSL 5 BASIC22.62■■□□□ 1.21
MSH5O43196 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC22.62■■□□□ 1.21
MSH5O43196 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC22.62■■□□□ 1.21
MSH5O43196 AC138761.1-201ENST00000584393 385 ntBASIC22.62■■□□□ 1.21
MSH5O43196 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC22.62■■□□□ 1.21
MSH5O43196 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC22.62■■□□□ 1.21
MSH5O43196 METTL23-205ENST00000588302 925 ntTSL 5 BASIC22.62■■□□□ 1.21
MSH5O43196 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC22.62■■□□□ 1.21
MSH5O43196 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC22.62■■□□□ 1.21
MSH5O43196 AC090912.3-201ENST00000609775 533 ntBASIC22.62■■□□□ 1.21
MSH5O43196 AC087893.1-201ENST00000612818 664 ntBASIC22.62■■□□□ 1.21
MSH5O43196 AC073592.4-201ENST00000623827 446 ntBASIC22.62■■□□□ 1.21
MSH5O43196 AC106733.1-201ENST00000624476 1038 ntBASIC22.62■■□□□ 1.21
MSH5O43196 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
MSH5O43196 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC22.62■■□□□ 1.21
MSH5O43196 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
MSH5O43196 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC22.62■■□□□ 1.21
MSH5O43196 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC22.62■■□□□ 1.21
MSH5O43196 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC22.62■■□□□ 1.21
MSH5O43196 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
MSH5O43196 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC22.62■■□□□ 1.21
MSH5O43196 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
MSH5O43196 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC22.62■■□□□ 1.21
MSH5O43196 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
MSH5O43196 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC22.62■■□□□ 1.21
MSH5O43196 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
MSH5O43196 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC22.61■■□□□ 1.21
MSH5O43196 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC22.61■■□□□ 1.21
MSH5O43196 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
MSH5O43196 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms