RNA–Protein interactions for RNA: ENST00000586792.5

ZNF540-204, Transcript of zinc finger protein 540, humanhuman

TSL 3 BASIC

Gene ZNF540, Length 564 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-204ENST00000586792 AEBP2Q6ZN18 517 aaPredicted RBP29.88■■■□□ 2.37
ZNF540-204ENST00000586792 CHIC1Q5VXU3 224 aa28.13■■■□□ 2.09
ZNF540-204ENST00000586792 SENP3Q9H4L4 574 aaPredicted RBP25.69■■□□□ 1.7
ZNF540-204ENST00000586792 PHF23Q9BUL5 403 aaPredicted RBP25.26■■□□□ 1.63
ZNF540-204ENST00000586792 FOXD1Q16676 465 aa23.89■■□□□ 1.41
ZNF540-204ENST00000586792 MSH5O43196 834 aa22.62■■□□□ 1.21
ZNF540-204ENST00000586792 POTEDQ86YR6 584 aa22.55■■□□□ 1.2
ZNF540-204ENST00000586792 PLPPR3Q6T4P5 718 aa22.39■■□□□ 1.17
ZNF540-204ENST00000586792 PIAS4Q8N2W9 510 aaPredicted RBP22.29■■□□□ 1.16
ZNF540-204ENST00000586792 PPP6R1Q9UPN7 881 aa22.03■■□□□ 1.12
ZNF540-204ENST00000586792 ADRA2BP18089 450 aa21.96■■□□□ 1.11
ZNF540-204ENST00000586792 SCAF1Q9H7N4 1312 aaKnown RBP20.28■□□□□ 0.84
ZNF540-204ENST00000586792 DMRT2Q9Y5R5 561 aa20.28■□□□□ 0.84
ZNF540-204ENST00000586792 MAPK8IP2Q13387 824 aaPredicted RBP20.26■□□□□ 0.83
ZNF540-204ENST00000586792 CACNB1Q02641 598 aaPredicted RBP19.59■□□□□ 0.73
ZNF540-204ENST00000586792 PPP4R3CPQ6ZMV5 832 aa19.53■□□□□ 0.72
ZNF540-204ENST00000586792 DCAF8L1A6NGE4 600 aa19.48■□□□□ 0.71
ZNF540-204ENST00000586792 HOXD11P31277 338 aaPredicted RBP19.41■□□□□ 0.7
ZNF540-204ENST00000586792 CNKSR2Q8WXI2 1034 aa19.29■□□□□ 0.68
ZNF540-204ENST00000586792 RNF216Q9NWF9 866 aaPredicted RBP19.2■□□□□ 0.66
ZNF540-204ENST00000586792 RNF39Q9H2S5 420 aa19.19■□□□□ 0.66
ZNF540-204ENST00000586792 C1QBPQ07021 282 aaKnown RBP18.96■□□□□ 0.63
ZNF540-204ENST00000586792 DNAJC5BQ9UF47 199 aa18.9■□□□□ 0.62
ZNF540-204ENST00000586792 NCBP3Q53F19 620 aaKnown RBP18.78■□□□□ 0.6
ZNF540-204ENST00000586792 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.52■□□□□ 0.56
ZNF540-204ENST00000586792 NPM3O75607 178 aaKnown RBP18.37■□□□□ 0.53
ZNF540-204ENST00000586792 U3KPZ7 1027 aaPredicted RBP18.02■□□□□ 0.48
ZNF540-204ENST00000586792 CAPN15O75808 1086 aa17.91■□□□□ 0.46
ZNF540-204ENST00000586792 DSG3P32926 999 aa17.85■□□□□ 0.45
ZNF540-204ENST00000586792 SPINK5Q9NQ38 1064 aaPredicted RBP17.84■□□□□ 0.45
ZNF540-204ENST00000586792 KCNA4P22459 653 aa17.68■□□□□ 0.42
ZNF540-204ENST00000586792 APLP2Q06481 763 aa17.68■□□□□ 0.42
ZNF540-204ENST00000586792 POTEHQ6S545 545 aa17.64■□□□□ 0.41
ZNF540-204ENST00000586792 SLC4A2P04920 1241 aa17.6■□□□□ 0.41
ZNF540-204ENST00000586792 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.56■□□□□ 0.4
ZNF540-204ENST00000586792 HNRNPUL2Q1KMD3 747 aaKnown RBP17.56■□□□□ 0.4
ZNF540-204ENST00000586792 ZNF219Q9P2Y4 722 aaPredicted RBP17.55■□□□□ 0.4
ZNF540-204ENST00000586792 TRHP20396 242 aaPredicted RBP17.53■□□□□ 0.4
ZNF540-204ENST00000586792 ABCB7O75027 752 aa17.39■□□□□ 0.37
ZNF540-204ENST00000586792 SAMD1Q6SPF0 538 aaPredicted RBP17.39■□□□□ 0.37
ZNF540-204ENST00000586792 RBM42Q9BTD8 480 aaKnown RBP17.16■□□□□ 0.34
ZNF540-204ENST00000586792 MYCNP04198 464 aaPredicted RBP17.07■□□□□ 0.32
ZNF540-204ENST00000586792 POLA2Q14181 598 aa16.98■□□□□ 0.31
ZNF540-204ENST00000586792 CHRDL2Q6WN34 429 aa16.83■□□□□ 0.28
ZNF540-204ENST00000586792 ZBTB12Q9Y330 459 aaPredicted RBP16.7■□□□□ 0.26
ZNF540-204ENST00000586792 SLC4A1APQ9BWU0 796 aaKnown RBP16.69■□□□□ 0.26
ZNF540-204ENST00000586792 FOXD4L1Q9NU39 408 aa16.68■□□□□ 0.26
ZNF540-204ENST00000586792 AKT1S1Q96B36 256 aa16.64■□□□□ 0.25
ZNF540-204ENST00000586792 ATF5Q9Y2D1 282 aaPredicted RBP16.57■□□□□ 0.24
ZNF540-204ENST00000586792 REM2Q8IYK8 340 aaPredicted RBP16.44■□□□□ 0.22
ZNF540-204ENST00000586792 OSCARQ8IYS5 282 aa16.4■□□□□ 0.22
ZNF540-204ENST00000586792 SP7Q8TDD2 431 aaPredicted RBP16.39■□□□□ 0.21
ZNF540-204ENST00000586792 PIP4P2Q8N4L2 257 aa16.33■□□□□ 0.2
ZNF540-204ENST00000586792 ATXN8OSP0DMR3 200 aa16.26■□□□□ 0.19
ZNF540-204ENST00000586792 PITPNM1O00562 1244 aa16.24■□□□□ 0.19
ZNF540-204ENST00000586792 FXR2P51116 673 aaKnown RBP eCLIP16.2■□□□□ 0.18
ZNF540-204ENST00000586792 HAX1O00165 279 aa16.18■□□□□ 0.18
ZNF540-204ENST00000586792 ZBTB22O15209 634 aa16.18■□□□□ 0.18
ZNF540-204ENST00000586792 FBLN2P98095 1184 aa16.12■□□□□ 0.17
ZNF540-204ENST00000586792 SPDYE2BA6NHP3 402 aa16.11■□□□□ 0.17
ZNF540-204ENST00000586792 SPDYE6P0CI01 402 aa16.11■□□□□ 0.17
ZNF540-204ENST00000586792 SPDYE2Q495Y8 402 aa16.11■□□□□ 0.17
ZNF540-204ENST00000586792 SPDYE1Q8NFV5 336 aaPredicted RBP15.93■□□□□ 0.14
ZNF540-204ENST00000586792 CLEC11AQ9Y240 323 aa15.88■□□□□ 0.13
ZNF540-204ENST00000586792 PRKAR2AP13861 404 aaKnown RBP15.85■□□□□ 0.13
ZNF540-204ENST00000586792 ZNF692Q9BU19 519 aaPredicted RBP15.85■□□□□ 0.13
ZNF540-204ENST00000586792 EVX2Q03828 476 aa15.82■□□□□ 0.12
ZNF540-204ENST00000586792 MKRN4PQ13434 485 aaPredicted RBP15.8■□□□□ 0.12
ZNF540-204ENST00000586792 SSUH2Q9Y2M2 353 aa15.8■□□□□ 0.12
ZNF540-204ENST00000586792 C19orf67A6NJJ6 358 aa15.69■□□□□ 0.1
ZNF540-204ENST00000586792 PRR29P0C7W0 189 aa15.6■□□□□ 0.09
ZNF540-204ENST00000586792 PABPN1Q86U42 306 aaKnown RBP eCLIP15.57■□□□□ 0.08
ZNF540-204ENST00000586792 GABBR2O75899 941 aa15.54■□□□□ 0.08
ZNF540-204ENST00000586792 CHADLQ6NUI6 762 aa15.54■□□□□ 0.08
ZNF540-204ENST00000586792 LHX8Q68G74 356 aa15.37■□□□□ 0.05
ZNF540-204ENST00000586792 CLCN6P51797 869 aa15.35■□□□□ 0.05
ZNF540-204ENST00000586792 FARP1Q9Y4F1 1045 aaPredicted RBP15.34■□□□□ 0.05
ZNF540-204ENST00000586792 CD44P16070 742 aaKnown RBP15.33■□□□□ 0.04
ZNF540-204ENST00000586792 CSRNP3Q8WYN3 585 aa15.19■□□□□ 0.02
ZNF540-204ENST00000586792 STAG3Q9UJ98 1225 aa15.18■□□□□ 0.02
ZNF540-204ENST00000586792 POTEIP0CG38 1075 aa15.14■□□□□ 0.01
ZNF540-204ENST00000586792 DCBLD2Q96PD2 775 aa15.12■□□□□ 0.01
ZNF540-204ENST00000586792 ZNF579Q8NAF0 562 aaKnown RBP15.08■□□□□ 0
ZNF540-204ENST00000586792 ZRANB1Q9UGI0 708 aa15.07■□□□□ 0
ZNF540-204ENST00000586792 CREBZFQ9NS37 354 aa15.05■□□□□ -0
ZNF540-204ENST00000586792 SPDYE4A6NLX3 237 aa14.97□□□□□ -0.01
ZNF540-204ENST00000586792 PAK3O75914 559 aaPredicted RBP14.96□□□□□ -0.01
ZNF540-204ENST00000586792 NPM1P06748 294 aaKnown RBP eCLIP14.89□□□□□ -0.03
ZNF540-204ENST00000586792 GALR2O43603 387 aaPredicted RBP14.87□□□□□ -0.03
ZNF540-204ENST00000586792 EHMT2Q96KQ7 1210 aa14.8□□□□□ -0.04
ZNF540-204ENST00000586792 PHF12Q96QT6 1004 aa14.76□□□□□ -0.05
ZNF540-204ENST00000586792 MNX1P50219 401 aaPredicted RBP14.73□□□□□ -0.05
ZNF540-204ENST00000586792 OTUD5Q96G74 571 aa14.69□□□□□ -0.06
ZNF540-204ENST00000586792 PLSCR2Q9NRY7 297 aa14.65□□□□□ -0.06
ZNF540-204ENST00000586792 POTEB2H3BUK9 544 aa14.62□□□□□ -0.07
ZNF540-204ENST00000586792 ASTLQ6HA08 431 aaPredicted RBP14.59□□□□□ -0.07
ZNF540-204ENST00000586792 PELP1Q8IZL8 1130 aaKnown RBP14.58□□□□□ -0.08
ZNF540-204ENST00000586792 SLC39A7Q92504 469 aa14.57□□□□□ -0.08
ZNF540-204ENST00000586792 MS4A3Q96HJ5 214 aa14.57□□□□□ -0.08
ZNF540-204ENST00000586792 C7P10643 843 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms