Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VPS13AQ96RL7 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
VPS13AQ96RL7 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
VPS13AQ96RL7 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
VPS13AQ96RL7 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
VPS13AQ96RL7 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
VPS13AQ96RL7 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VPS13AQ96RL7 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VPS13AQ96RL7 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC15.76■□□□□ 0.11
VPS13AQ96RL7 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
VPS13AQ96RL7 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC15.76■□□□□ 0.11
VPS13AQ96RL7 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC15.76■□□□□ 0.11
VPS13AQ96RL7 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC15.76■□□□□ 0.11
VPS13AQ96RL7 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VPS13AQ96RL7 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VPS13AQ96RL7 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VPS13AQ96RL7 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
VPS13AQ96RL7 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
VPS13AQ96RL7 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC15.75■□□□□ 0.11
VPS13AQ96RL7 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
VPS13AQ96RL7 AP001063.1-201ENST00000568332 529 ntBASIC15.75■□□□□ 0.11
VPS13AQ96RL7 AL133499.1-201ENST00000596207 608 ntBASIC15.75■□□□□ 0.11
VPS13AQ96RL7 AC244452.3-201ENST00000636814 210 ntBASIC15.75■□□□□ 0.11
VPS13AQ96RL7 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VPS13AQ96RL7 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC15.75■□□□□ 0.11
VPS13AQ96RL7 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC15.75■□□□□ 0.11
VPS13AQ96RL7 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
VPS13AQ96RL7 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VPS13AQ96RL7 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC15.75■□□□□ 0.11
VPS13AQ96RL7 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VPS13AQ96RL7 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
VPS13AQ96RL7 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
VPS13AQ96RL7 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC15.75■□□□□ 0.11
VPS13AQ96RL7 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
VPS13AQ96RL7 C2orf27AP3-201ENST00000434123 579 ntBASIC15.75■□□□□ 0.11
VPS13AQ96RL7 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC15.75■□□□□ 0.11
VPS13AQ96RL7 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC15.75■□□□□ 0.11
VPS13AQ96RL7 AL354718.3-201ENST00000616414 581 ntBASIC15.75■□□□□ 0.11
VPS13AQ96RL7 CR382287.1-201ENST00000623954 586 ntBASIC15.75■□□□□ 0.11
VPS13AQ96RL7 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
VPS13AQ96RL7 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
VPS13AQ96RL7 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC15.75■□□□□ 0.11
VPS13AQ96RL7 PCDH8P1-201ENST00000428983 2773 ntBASIC15.75■□□□□ 0.11
VPS13AQ96RL7 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VPS13AQ96RL7 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
VPS13AQ96RL7 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC15.75■□□□□ 0.11
VPS13AQ96RL7 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
VPS13AQ96RL7 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VPS13AQ96RL7 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
VPS13AQ96RL7 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
VPS13AQ96RL7 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC15.75■□□□□ 0.11
VPS13AQ96RL7 EEF1DP6-201ENST00000449232 372 ntBASIC15.75■□□□□ 0.11
VPS13AQ96RL7 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC15.75■□□□□ 0.11
VPS13AQ96RL7 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC15.75■□□□□ 0.11
VPS13AQ96RL7 YRDCP1-201ENST00000621419 643 ntBASIC15.75■□□□□ 0.11
VPS13AQ96RL7 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VPS13AQ96RL7 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS13AQ96RL7 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
VPS13AQ96RL7 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
VPS13AQ96RL7 AC015818.8-201ENST00000587907 1519 ntBASIC15.74■□□□□ 0.11
VPS13AQ96RL7 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
VPS13AQ96RL7 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC15.74■□□□□ 0.11
VPS13AQ96RL7 PCDHB18P-201ENST00000524813 2368 ntBASIC15.74■□□□□ 0.11
VPS13AQ96RL7 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC15.74■□□□□ 0.11
VPS13AQ96RL7 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC15.74■□□□□ 0.11
VPS13AQ96RL7 RPSAP36-202ENST00000494591 1261 ntBASIC15.74■□□□□ 0.11
VPS13AQ96RL7 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC15.74■□□□□ 0.11
VPS13AQ96RL7 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC15.74■□□□□ 0.11
VPS13AQ96RL7 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
VPS13AQ96RL7 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS13AQ96RL7 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC15.74■□□□□ 0.11
VPS13AQ96RL7 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS13AQ96RL7 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC15.74■□□□□ 0.11
VPS13AQ96RL7 GPAA1P2-202ENST00000606848 1787 ntBASIC15.74■□□□□ 0.11
VPS13AQ96RL7 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS13AQ96RL7 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS13AQ96RL7 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
VPS13AQ96RL7 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC15.74■□□□□ 0.11
VPS13AQ96RL7 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC15.74■□□□□ 0.11
VPS13AQ96RL7 IQSEC3P1-201ENST00000538799 536 ntBASIC15.74■□□□□ 0.11
VPS13AQ96RL7 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
VPS13AQ96RL7 HNRNPA1P48-202ENST00000565308 961 ntBASIC15.74■□□□□ 0.11
VPS13AQ96RL7 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC15.74■□□□□ 0.11
VPS13AQ96RL7 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC15.74■□□□□ 0.11
VPS13AQ96RL7 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS13AQ96RL7 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
VPS13AQ96RL7 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS13AQ96RL7 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC15.73■□□□□ 0.11
VPS13AQ96RL7 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS13AQ96RL7 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC15.73■□□□□ 0.11
VPS13AQ96RL7 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS13AQ96RL7 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS13AQ96RL7 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC15.73■□□□□ 0.11
VPS13AQ96RL7 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
VPS13AQ96RL7 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC15.73■□□□□ 0.11
VPS13AQ96RL7 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
VPS13AQ96RL7 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC15.73■□□□□ 0.11
VPS13AQ96RL7 RN7SL11P-201ENST00000471305 293 ntBASIC15.73■□□□□ 0.11
VPS13AQ96RL7 AHRR-211ENST00000515206 462 ntTSL 5 BASIC15.73■□□□□ 0.11
VPS13AQ96RL7 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms