Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
VRK3Q8IV63 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VRK3Q8IV63 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC15.85■□□□□ 0.13
VRK3Q8IV63 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC15.85■□□□□ 0.13
VRK3Q8IV63 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
VRK3Q8IV63 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC15.85■□□□□ 0.13
VRK3Q8IV63 AC112504.1-201ENST00000623415 1841 ntBASIC15.85■□□□□ 0.13
VRK3Q8IV63 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VRK3Q8IV63 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
VRK3Q8IV63 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC15.85■□□□□ 0.13
VRK3Q8IV63 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
VRK3Q8IV63 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VRK3Q8IV63 RPL30-202ENST00000396070 440 ntTSL 2 BASIC15.85■□□□□ 0.13
VRK3Q8IV63 HAUS4P1-201ENST00000406739 1145 ntBASIC15.85■□□□□ 0.13
VRK3Q8IV63 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC15.85■□□□□ 0.13
VRK3Q8IV63 TSEN15P1-201ENST00000423257 515 ntBASIC15.85■□□□□ 0.13
VRK3Q8IV63 URGCP-206ENST00000446958 365 ntTSL 2 BASIC15.85■□□□□ 0.13
VRK3Q8IV63 AC245100.5-201ENST00000452108 331 ntBASIC15.85■□□□□ 0.13
VRK3Q8IV63 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC15.85■□□□□ 0.13
VRK3Q8IV63 HLA-J-203ENST00000494367 1087 ntBASIC15.85■□□□□ 0.13
VRK3Q8IV63 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
VRK3Q8IV63 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC15.85■□□□□ 0.13
VRK3Q8IV63 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC15.85■□□□□ 0.13
VRK3Q8IV63 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
VRK3Q8IV63 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC15.85■□□□□ 0.13
VRK3Q8IV63 GPALPP1-207ENST00000611650 899 ntBASIC15.85■□□□□ 0.13
VRK3Q8IV63 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
VRK3Q8IV63 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VRK3Q8IV63 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
VRK3Q8IV63 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC15.85■□□□□ 0.13
VRK3Q8IV63 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VRK3Q8IV63 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
VRK3Q8IV63 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VRK3Q8IV63 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VRK3Q8IV63 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC15.85■□□□□ 0.13
VRK3Q8IV63 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
VRK3Q8IV63 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC15.85■□□□□ 0.13
VRK3Q8IV63 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC15.85■□□□□ 0.13
VRK3Q8IV63 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC15.85■□□□□ 0.13
VRK3Q8IV63 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
VRK3Q8IV63 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
VRK3Q8IV63 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC15.85■□□□□ 0.13
VRK3Q8IV63 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC15.85■□□□□ 0.13
VRK3Q8IV63 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VRK3Q8IV63 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
VRK3Q8IV63 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VRK3Q8IV63 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VRK3Q8IV63 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
VRK3Q8IV63 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
VRK3Q8IV63 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VRK3Q8IV63 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
VRK3Q8IV63 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC15.84■□□□□ 0.13
VRK3Q8IV63 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VRK3Q8IV63 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
VRK3Q8IV63 AL365203.3-201ENST00000609742 2057 ntBASIC15.84■□□□□ 0.13
VRK3Q8IV63 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
VRK3Q8IV63 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC15.84■□□□□ 0.13
VRK3Q8IV63 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VRK3Q8IV63 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC15.84■□□□□ 0.13
VRK3Q8IV63 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC15.84■□□□□ 0.13
VRK3Q8IV63 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC15.84■□□□□ 0.13
VRK3Q8IV63 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
VRK3Q8IV63 BANF1P1-201ENST00000553684 263 ntBASIC15.84■□□□□ 0.13
VRK3Q8IV63 MAX-210ENST00000555419 765 ntTSL 5 BASIC15.84■□□□□ 0.13
VRK3Q8IV63 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VRK3Q8IV63 AC018529.1-201ENST00000613063 361 ntBASIC15.84■□□□□ 0.13
VRK3Q8IV63 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
VRK3Q8IV63 AP001059.3-201ENST00000619053 235 ntBASIC15.84■□□□□ 0.13
VRK3Q8IV63 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
VRK3Q8IV63 AL136982.4-201ENST00000437689 1740 ntBASIC15.84■□□□□ 0.13
VRK3Q8IV63 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC15.84■□□□□ 0.13
VRK3Q8IV63 CROCCP1-201ENST00000426910 5675 ntBASIC15.84■□□□□ 0.13
VRK3Q8IV63 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
VRK3Q8IV63 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
VRK3Q8IV63 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
VRK3Q8IV63 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC15.84■□□□□ 0.13
VRK3Q8IV63 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VRK3Q8IV63 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC15.84■□□□□ 0.13
VRK3Q8IV63 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
VRK3Q8IV63 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
VRK3Q8IV63 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VRK3Q8IV63 AC134407.2-201ENST00000625089 1978 ntBASIC15.84■□□□□ 0.13
VRK3Q8IV63 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VRK3Q8IV63 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.13
VRK3Q8IV63 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC15.83■□□□□ 0.13
VRK3Q8IV63 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
VRK3Q8IV63 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
VRK3Q8IV63 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC15.83■□□□□ 0.13
VRK3Q8IV63 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
VRK3Q8IV63 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC15.83■□□□□ 0.13
VRK3Q8IV63 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
VRK3Q8IV63 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC15.83■□□□□ 0.13
VRK3Q8IV63 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
VRK3Q8IV63 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC15.83■□□□□ 0.12
VRK3Q8IV63 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VRK3Q8IV63 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC15.83■□□□□ 0.12
VRK3Q8IV63 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VRK3Q8IV63 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
VRK3Q8IV63 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VRK3Q8IV63 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC15.83■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 131.9 ms