Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC19.88■□□□□ 0.77
NUP98P52948 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC19.88■□□□□ 0.77
NUP98P52948 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
NUP98P52948 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
NUP98P52948 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
NUP98P52948 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC19.87■□□□□ 0.77
NUP98P52948 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
NUP98P52948 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC19.87■□□□□ 0.77
NUP98P52948 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
NUP98P52948 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
NUP98P52948 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
NUP98P52948 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
NUP98P52948 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
NUP98P52948 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
NUP98P52948 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
NUP98P52948 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC19.87■□□□□ 0.77
NUP98P52948 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC19.87■□□□□ 0.77
NUP98P52948 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
NUP98P52948 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
NUP98P52948 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC19.87■□□□□ 0.77
NUP98P52948 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC19.87■□□□□ 0.77
NUP98P52948 MIR4525-201ENST00000580000 75 ntBASIC19.87■□□□□ 0.77
NUP98P52948 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC19.87■□□□□ 0.77
NUP98P52948 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC19.87■□□□□ 0.77
NUP98P52948 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
NUP98P52948 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
NUP98P52948 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
NUP98P52948 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
NUP98P52948 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
NUP98P52948 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NUP98P52948 MIR648-201ENST00000385046 94 ntBASIC19.86■□□□□ 0.77
NUP98P52948 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
NUP98P52948 AC022137.2-201ENST00000503482 481 ntBASIC19.86■□□□□ 0.77
NUP98P52948 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NUP98P52948 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC19.86■□□□□ 0.77
NUP98P52948 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC19.86■□□□□ 0.77
NUP98P52948 MIR4538-201ENST00000581377 78 ntBASIC19.86■□□□□ 0.77
NUP98P52948 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC19.86■□□□□ 0.77
NUP98P52948 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC19.86■□□□□ 0.77
NUP98P52948 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NUP98P52948 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC19.86■□□□□ 0.77
NUP98P52948 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NUP98P52948 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
NUP98P52948 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC19.86■□□□□ 0.77
NUP98P52948 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NUP98P52948 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC19.86■□□□□ 0.77
NUP98P52948 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NUP98P52948 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
NUP98P52948 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC19.86■□□□□ 0.77
NUP98P52948 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
NUP98P52948 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
NUP98P52948 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC19.86■□□□□ 0.77
NUP98P52948 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NUP98P52948 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC19.86■□□□□ 0.77
NUP98P52948 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
NUP98P52948 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
NUP98P52948 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NUP98P52948 KRT43P-201ENST00000434019 910 ntBASIC19.86■□□□□ 0.77
NUP98P52948 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC19.86■□□□□ 0.77
NUP98P52948 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC19.86■□□□□ 0.77
NUP98P52948 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC19.86■□□□□ 0.77
NUP98P52948 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
NUP98P52948 DRD5P1-201ENST00000456605 1438 ntBASIC19.85■□□□□ 0.77
NUP98P52948 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
NUP98P52948 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC19.85■□□□□ 0.77
NUP98P52948 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
NUP98P52948 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
NUP98P52948 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC19.85■□□□□ 0.77
NUP98P52948 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC19.85■□□□□ 0.77
NUP98P52948 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
NUP98P52948 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
NUP98P52948 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
NUP98P52948 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
NUP98P52948 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
NUP98P52948 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
NUP98P52948 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
NUP98P52948 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
NUP98P52948 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
NUP98P52948 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC19.85■□□□□ 0.77
NUP98P52948 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
NUP98P52948 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
NUP98P52948 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
NUP98P52948 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
NUP98P52948 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC19.85■□□□□ 0.77
NUP98P52948 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
NUP98P52948 BAATP1-201ENST00000412284 1225 ntBASIC19.85■□□□□ 0.77
NUP98P52948 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
NUP98P52948 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
NUP98P52948 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC19.85■□□□□ 0.77
NUP98P52948 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
NUP98P52948 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC19.85■□□□□ 0.77
NUP98P52948 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC19.85■□□□□ 0.77
NUP98P52948 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC19.85■□□□□ 0.77
NUP98P52948 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC19.85■□□□□ 0.77
NUP98P52948 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC19.85■□□□□ 0.77
NUP98P52948 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC19.85■□□□□ 0.77
NUP98P52948 KRT90P-201ENST00000549264 1064 ntBASIC19.85■□□□□ 0.77
NUP98P52948 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC19.85■□□□□ 0.77
NUP98P52948 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC19.85■□□□□ 0.77
NUP98P52948 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC19.85■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms