Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
MSX2P35548 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
MSX2P35548 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSX2P35548 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
MSX2P35548 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC15.57■□□□□ 0.08
MSX2P35548 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC15.57■□□□□ 0.08
MSX2P35548 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
MSX2P35548 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSX2P35548 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSX2P35548 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSX2P35548 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
MSX2P35548 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC15.57■□□□□ 0.08
MSX2P35548 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSX2P35548 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC15.57■□□□□ 0.08
MSX2P35548 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC15.57■□□□□ 0.08
MSX2P35548 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC15.57■□□□□ 0.08
MSX2P35548 AL121672.3-201ENST00000608644 468 ntBASIC15.57■□□□□ 0.08
MSX2P35548 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC15.57■□□□□ 0.08
MSX2P35548 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
MSX2P35548 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC15.57■□□□□ 0.08
MSX2P35548 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
MSX2P35548 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
MSX2P35548 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSX2P35548 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC15.57■□□□□ 0.08
MSX2P35548 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSX2P35548 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC15.57■□□□□ 0.08
MSX2P35548 TCAF2P1-201ENST00000291129 2421 ntBASIC15.57■□□□□ 0.08
MSX2P35548 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC15.57■□□□□ 0.08
MSX2P35548 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSX2P35548 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC15.57■□□□□ 0.08
MSX2P35548 AL592424.1-201ENST00000563624 1536 ntBASIC15.57■□□□□ 0.08
MSX2P35548 AC068587.6-202ENST00000641839 5619 ntBASIC15.57■□□□□ 0.08
MSX2P35548 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
MSX2P35548 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSX2P35548 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSX2P35548 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSX2P35548 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSX2P35548 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
MSX2P35548 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSX2P35548 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
MSX2P35548 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
MSX2P35548 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
MSX2P35548 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
MSX2P35548 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC15.56■□□□□ 0.08
MSX2P35548 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC15.56■□□□□ 0.08
MSX2P35548 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
MSX2P35548 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
MSX2P35548 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
MSX2P35548 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
MSX2P35548 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC15.56■□□□□ 0.08
MSX2P35548 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
MSX2P35548 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC15.56■□□□□ 0.08
MSX2P35548 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC15.56■□□□□ 0.08
MSX2P35548 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC15.56■□□□□ 0.08
MSX2P35548 IGHV3-47-201ENST00000425060 335 ntBASIC15.56■□□□□ 0.08
MSX2P35548 DAP-202ENST00000432074 1048 ntTSL 2 BASIC15.56■□□□□ 0.08
MSX2P35548 THAP5-204ENST00000438865 868 ntTSL 2 BASIC15.56■□□□□ 0.08
MSX2P35548 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC15.56■□□□□ 0.08
MSX2P35548 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
MSX2P35548 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
MSX2P35548 RBSN-204ENST00000449050 903 ntTSL 2 BASIC15.56■□□□□ 0.08
MSX2P35548 TOB2P1-201ENST00000469761 992 ntBASIC15.56■□□□□ 0.08
MSX2P35548 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC15.56■□□□□ 0.08
MSX2P35548 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC15.56■□□□□ 0.08
MSX2P35548 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC15.56■□□□□ 0.08
MSX2P35548 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC15.56■□□□□ 0.08
MSX2P35548 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC15.56■□□□□ 0.08
MSX2P35548 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC15.56■□□□□ 0.08
MSX2P35548 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
MSX2P35548 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
MSX2P35548 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
MSX2P35548 AC114341.1-201ENST00000618070 349 ntBASIC15.56■□□□□ 0.08
MSX2P35548 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC15.56■□□□□ 0.08
MSX2P35548 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
MSX2P35548 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
MSX2P35548 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
MSX2P35548 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
MSX2P35548 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
MSX2P35548 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
MSX2P35548 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC15.56■□□□□ 0.08
MSX2P35548 POLL-217ENST00000628479 1953 ntTSL 5 BASIC15.56■□□□□ 0.08
MSX2P35548 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC15.56■□□□□ 0.08
MSX2P35548 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC15.56■□□□□ 0.08
MSX2P35548 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
MSX2P35548 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
MSX2P35548 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
MSX2P35548 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
MSX2P35548 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
MSX2P35548 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
MSX2P35548 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC15.55■□□□□ 0.08
MSX2P35548 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
MSX2P35548 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
MSX2P35548 CELP-203ENST00000624767 2414 ntTSL 5 BASIC15.55■□□□□ 0.08
MSX2P35548 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
MSX2P35548 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC15.55■□□□□ 0.08
MSX2P35548 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
MSX2P35548 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC15.55■□□□□ 0.08
MSX2P35548 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC15.55■□□□□ 0.08
MSX2P35548 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
MSX2P35548 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms