Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
MSH3P20585 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
MSH3P20585 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
MSH3P20585 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC16.21■□□□□ 0.19
MSH3P20585 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC16.21■□□□□ 0.19
MSH3P20585 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC16.21■□□□□ 0.19
MSH3P20585 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC16.21■□□□□ 0.19
MSH3P20585 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC16.21■□□□□ 0.19
MSH3P20585 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
MSH3P20585 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
MSH3P20585 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.19
MSH3P20585 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
MSH3P20585 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
MSH3P20585 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
MSH3P20585 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC16.21■□□□□ 0.19
MSH3P20585 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
MSH3P20585 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC16.21■□□□□ 0.19
MSH3P20585 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC16.21■□□□□ 0.19
MSH3P20585 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
MSH3P20585 PP14571-201ENST00000404327 934 ntTSL 2 BASIC16.21■□□□□ 0.19
MSH3P20585 AL627223.1-201ENST00000416693 442 ntBASIC16.21■□□□□ 0.19
MSH3P20585 KRT18P32-201ENST00000424695 1287 ntBASIC16.21■□□□□ 0.19
MSH3P20585 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
MSH3P20585 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC16.21■□□□□ 0.19
MSH3P20585 SPTSSB-204ENST00000617024 1292 ntBASIC16.21■□□□□ 0.19
MSH3P20585 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
MSH3P20585 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC16.21■□□□□ 0.19
MSH3P20585 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC16.21■□□□□ 0.19
MSH3P20585 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
MSH3P20585 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC16.21■□□□□ 0.19
MSH3P20585 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC16.21■□□□□ 0.19
MSH3P20585 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
MSH3P20585 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
MSH3P20585 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
MSH3P20585 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
MSH3P20585 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC16.21■□□□□ 0.18
MSH3P20585 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
MSH3P20585 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC16.21■□□□□ 0.18
MSH3P20585 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
MSH3P20585 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
MSH3P20585 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.18
MSH3P20585 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
MSH3P20585 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC16.21■□□□□ 0.18
MSH3P20585 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC16.21■□□□□ 0.18
MSH3P20585 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC16.2■□□□□ 0.18
MSH3P20585 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
MSH3P20585 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
MSH3P20585 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
MSH3P20585 AL662844.4-201ENST00000606367 2838 ntBASIC16.2■□□□□ 0.18
MSH3P20585 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC16.2■□□□□ 0.18
MSH3P20585 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
MSH3P20585 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
MSH3P20585 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
MSH3P20585 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC16.2■□□□□ 0.18
MSH3P20585 MIR346-201ENST00000362234 95 ntBASIC16.2■□□□□ 0.18
MSH3P20585 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC16.2■□□□□ 0.18
MSH3P20585 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC16.2■□□□□ 0.18
MSH3P20585 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC16.2■□□□□ 0.18
MSH3P20585 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC16.2■□□□□ 0.18
MSH3P20585 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC16.2■□□□□ 0.18
MSH3P20585 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
MSH3P20585 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
MSH3P20585 SLC25A39P2-201ENST00000537614 270 ntBASIC16.2■□□□□ 0.18
MSH3P20585 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC16.2■□□□□ 0.18
MSH3P20585 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC16.2■□□□□ 0.18
MSH3P20585 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC16.2■□□□□ 0.18
MSH3P20585 FHL2-212ENST00000607522 759 ntTSL 2 BASIC16.2■□□□□ 0.18
MSH3P20585 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
MSH3P20585 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
MSH3P20585 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
MSH3P20585 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
MSH3P20585 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
MSH3P20585 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
MSH3P20585 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
MSH3P20585 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
MSH3P20585 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
MSH3P20585 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
MSH3P20585 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
MSH3P20585 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
MSH3P20585 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC16.19■□□□□ 0.18
MSH3P20585 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
MSH3P20585 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC16.19■□□□□ 0.18
MSH3P20585 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC16.19■□□□□ 0.18
MSH3P20585 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
MSH3P20585 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
MSH3P20585 FRMD6-AS1-201ENST00000617151 2229 ntBASIC16.19■□□□□ 0.18
MSH3P20585 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
MSH3P20585 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
MSH3P20585 PCDHA1-201ENST00000378133 2726 ntBASIC16.19■□□□□ 0.18
MSH3P20585 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
MSH3P20585 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
MSH3P20585 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
MSH3P20585 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
MSH3P20585 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
MSH3P20585 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
MSH3P20585 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
MSH3P20585 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
MSH3P20585 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
MSH3P20585 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
MSH3P20585 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 73.9 ms