Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 VMO1-203ENST00000416307 712 ntTSL 2 BASIC18.8■□□□□ 0.6
ERCC3P19447 AL353779.1-201ENST00000434793 351 ntBASIC18.8■□□□□ 0.6
ERCC3P19447 NAA50-208ENST00000497255 789 ntTSL 5 BASIC18.8■□□□□ 0.6
ERCC3P19447 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
ERCC3P19447 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
ERCC3P19447 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
ERCC3P19447 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC18.8■□□□□ 0.6
ERCC3P19447 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
ERCC3P19447 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
ERCC3P19447 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ERCC3P19447 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
ERCC3P19447 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
ERCC3P19447 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC18.8■□□□□ 0.6
ERCC3P19447 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
ERCC3P19447 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ERCC3P19447 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ERCC3P19447 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
ERCC3P19447 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
ERCC3P19447 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
ERCC3P19447 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC18.8■□□□□ 0.6
ERCC3P19447 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ERCC3P19447 AL391256.1-201ENST00000443260 1855 ntBASIC18.8■□□□□ 0.6
ERCC3P19447 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ERCC3P19447 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
ERCC3P19447 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ERCC3P19447 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ERCC3P19447 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC18.79■□□□□ 0.6
ERCC3P19447 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
ERCC3P19447 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC18.79■□□□□ 0.6
ERCC3P19447 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
ERCC3P19447 AC078925.2-201ENST00000624013 1973 ntBASIC18.79■□□□□ 0.6
ERCC3P19447 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
ERCC3P19447 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ERCC3P19447 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ERCC3P19447 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ERCC3P19447 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
ERCC3P19447 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
ERCC3P19447 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ERCC3P19447 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
ERCC3P19447 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ERCC3P19447 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
ERCC3P19447 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC18.79■□□□□ 0.6
ERCC3P19447 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
ERCC3P19447 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC18.79■□□□□ 0.6
ERCC3P19447 AC093724.1-201ENST00000448659 1027 ntBASIC18.79■□□□□ 0.6
ERCC3P19447 KRT17P7-201ENST00000451704 1104 ntBASIC18.79■□□□□ 0.6
ERCC3P19447 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC18.79■□□□□ 0.6
ERCC3P19447 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC18.79■□□□□ 0.6
ERCC3P19447 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC18.79■□□□□ 0.6
ERCC3P19447 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC18.79■□□□□ 0.6
ERCC3P19447 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC18.79■□□□□ 0.6
ERCC3P19447 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ERCC3P19447 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
ERCC3P19447 AL512652.2-201ENST00000625156 1716 ntBASIC18.79■□□□□ 0.6
ERCC3P19447 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC18.79■□□□□ 0.6
ERCC3P19447 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
ERCC3P19447 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
ERCC3P19447 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ERCC3P19447 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC18.79■□□□□ 0.6
ERCC3P19447 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
ERCC3P19447 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC18.79■□□□□ 0.6
ERCC3P19447 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ERCC3P19447 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC18.79■□□□□ 0.6
ERCC3P19447 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
ERCC3P19447 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC18.79■□□□□ 0.6
ERCC3P19447 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
ERCC3P19447 AL662844.4-201ENST00000606367 2838 ntBASIC18.78■□□□□ 0.6
ERCC3P19447 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
ERCC3P19447 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
ERCC3P19447 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
ERCC3P19447 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
ERCC3P19447 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
ERCC3P19447 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC18.78■□□□□ 0.6
ERCC3P19447 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
ERCC3P19447 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
ERCC3P19447 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
ERCC3P19447 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
ERCC3P19447 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
ERCC3P19447 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
ERCC3P19447 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
ERCC3P19447 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC18.78■□□□□ 0.6
ERCC3P19447 PTPA-220ENST00000436883 532 ntTSL 4 BASIC18.78■□□□□ 0.6
ERCC3P19447 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC18.78■□□□□ 0.6
ERCC3P19447 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
ERCC3P19447 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
ERCC3P19447 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC18.78■□□□□ 0.6
ERCC3P19447 ZNF890P-202ENST00000530367 1156 ntBASIC18.78■□□□□ 0.6
ERCC3P19447 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC18.78■□□□□ 0.6
ERCC3P19447 AL512361.1-201ENST00000554200 418 ntBASIC18.78■□□□□ 0.6
ERCC3P19447 AC104794.3-201ENST00000566840 1248 ntBASIC18.78■□□□□ 0.6
ERCC3P19447 AC140912.1-201ENST00000577171 1054 ntBASIC18.78■□□□□ 0.6
ERCC3P19447 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
ERCC3P19447 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC18.78■□□□□ 0.6
ERCC3P19447 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC18.78■□□□□ 0.6
ERCC3P19447 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
ERCC3P19447 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC18.78■□□□□ 0.6
ERCC3P19447 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC18.78■□□□□ 0.6
ERCC3P19447 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
ERCC3P19447 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
ERCC3P19447 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms