Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
HOXD4P09016 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HOXD4P09016 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
HOXD4P09016 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
HOXD4P09016 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HOXD4P09016 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HOXD4P09016 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC14.79□□□□□ -0.04
HOXD4P09016 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HOXD4P09016 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC14.79□□□□□ -0.04
HOXD4P09016 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
HOXD4P09016 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HOXD4P09016 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC14.79□□□□□ -0.04
HOXD4P09016 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
HOXD4P09016 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
HOXD4P09016 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC14.79□□□□□ -0.04
HOXD4P09016 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HOXD4P09016 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HOXD4P09016 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
HOXD4P09016 AC142381.1-201ENST00000426099 345 ntBASIC14.79□□□□□ -0.04
HOXD4P09016 FAM207CP-201ENST00000443486 507 ntBASIC14.79□□□□□ -0.04
HOXD4P09016 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HOXD4P09016 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HOXD4P09016 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HOXD4P09016 NARF-206ENST00000457415 1668 ntTSL 5 BASIC14.79□□□□□ -0.04
HOXD4P09016 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
HOXD4P09016 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC14.79□□□□□ -0.04
HOXD4P09016 PRYP6-201ENST00000514804 343 ntBASIC14.79□□□□□ -0.04
HOXD4P09016 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC14.79□□□□□ -0.04
HOXD4P09016 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HOXD4P09016 QPRT-203ENST00000562473 579 ntTSL 3 BASIC14.79□□□□□ -0.04
HOXD4P09016 RARRES2P9-201ENST00000565168 469 ntBASIC14.79□□□□□ -0.04
HOXD4P09016 AL138918.1-201ENST00000568306 659 ntBASIC14.79□□□□□ -0.04
HOXD4P09016 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
HOXD4P09016 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HOXD4P09016 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC14.79□□□□□ -0.04
HOXD4P09016 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC14.79□□□□□ -0.04
HOXD4P09016 YTHDF3-AS1-201ENST00000603538 718 ntBASIC14.79□□□□□ -0.04
HOXD4P09016 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
HOXD4P09016 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC14.79□□□□□ -0.04
HOXD4P09016 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC14.79□□□□□ -0.04
HOXD4P09016 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC14.79□□□□□ -0.04
HOXD4P09016 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC14.79□□□□□ -0.04
HOXD4P09016 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
HOXD4P09016 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HOXD4P09016 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HOXD4P09016 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC14.79□□□□□ -0.04
HOXD4P09016 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC14.79□□□□□ -0.04
HOXD4P09016 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
HOXD4P09016 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC14.79□□□□□ -0.04
HOXD4P09016 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
HOXD4P09016 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXD4P09016 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXD4P09016 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXD4P09016 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXD4P09016 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC14.78□□□□□ -0.04
HOXD4P09016 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXD4P09016 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HOXD4P09016 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC14.78□□□□□ -0.04
HOXD4P09016 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HOXD4P09016 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
HOXD4P09016 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC14.78□□□□□ -0.04
HOXD4P09016 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXD4P09016 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXD4P09016 KRT8P39-201ENST00000396270 1433 ntBASIC14.78□□□□□ -0.04
HOXD4P09016 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXD4P09016 AL035456.1-201ENST00000456064 1369 ntBASIC14.78□□□□□ -0.04
HOXD4P09016 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC14.78□□□□□ -0.04
HOXD4P09016 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC14.78□□□□□ -0.04
HOXD4P09016 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC14.78□□□□□ -0.04
HOXD4P09016 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXD4P09016 HLA-H-201ENST00000383620 1096 ntBASIC14.78□□□□□ -0.04
HOXD4P09016 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC14.78□□□□□ -0.04
HOXD4P09016 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HOXD4P09016 IGHV3-42-201ENST00000520410 361 ntBASIC14.78□□□□□ -0.04
HOXD4P09016 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC14.78□□□□□ -0.04
HOXD4P09016 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXD4P09016 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC14.78□□□□□ -0.04
HOXD4P09016 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC14.78□□□□□ -0.04
HOXD4P09016 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC14.78□□□□□ -0.04
HOXD4P09016 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HOXD4P09016 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC14.78□□□□□ -0.04
HOXD4P09016 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HOXD4P09016 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXD4P09016 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXD4P09016 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
HOXD4P09016 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXD4P09016 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXD4P09016 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXD4P09016 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXD4P09016 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXD4P09016 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXD4P09016 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
HOXD4P09016 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
HOXD4P09016 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
HOXD4P09016 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC14.77□□□□□ -0.04
HOXD4P09016 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
HOXD4P09016 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
HOXD4P09016 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
HOXD4P09016 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC14.77□□□□□ -0.04
HOXD4P09016 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms