Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
APOEP02649 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC17.07■□□□□ 0.32
APOEP02649 AC063926.3-201ENST00000624734 5658 ntBASIC17.07■□□□□ 0.32
APOEP02649 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
APOEP02649 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
APOEP02649 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC17.07■□□□□ 0.32
APOEP02649 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC17.07■□□□□ 0.32
APOEP02649 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
APOEP02649 AGK-211ENST00000629555 2765 ntTSL 5 BASIC17.06■□□□□ 0.32
APOEP02649 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC17.06■□□□□ 0.32
APOEP02649 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC17.06■□□□□ 0.32
APOEP02649 CICP6-201ENST00000457191 2729 ntBASIC17.06■□□□□ 0.32
APOEP02649 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
APOEP02649 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
APOEP02649 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
APOEP02649 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
APOEP02649 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
APOEP02649 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
APOEP02649 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
APOEP02649 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
APOEP02649 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
APOEP02649 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
APOEP02649 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC17.06■□□□□ 0.32
APOEP02649 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
APOEP02649 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
APOEP02649 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC17.06■□□□□ 0.32
APOEP02649 PP14571-201ENST00000404327 934 ntTSL 2 BASIC17.06■□□□□ 0.32
APOEP02649 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC17.06■□□□□ 0.32
APOEP02649 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
APOEP02649 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
APOEP02649 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC17.06■□□□□ 0.32
APOEP02649 SLC25A39P2-201ENST00000537614 270 ntBASIC17.06■□□□□ 0.32
APOEP02649 AC084121.4-201ENST00000641598 221 ntBASIC17.06■□□□□ 0.32
APOEP02649 AF228730.8-201ENST00000642140 221 ntBASIC17.06■□□□□ 0.32
APOEP02649 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC17.06■□□□□ 0.32
APOEP02649 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
APOEP02649 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
APOEP02649 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
APOEP02649 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
APOEP02649 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC17.06■□□□□ 0.32
APOEP02649 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC17.06■□□□□ 0.32
APOEP02649 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
APOEP02649 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC17.06■□□□□ 0.32
APOEP02649 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
APOEP02649 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC17.06■□□□□ 0.32
APOEP02649 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
APOEP02649 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
APOEP02649 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
APOEP02649 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
APOEP02649 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
APOEP02649 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
APOEP02649 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
APOEP02649 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
APOEP02649 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC17.05■□□□□ 0.32
APOEP02649 KRT18P28-201ENST00000453838 1332 ntBASIC17.05■□□□□ 0.32
APOEP02649 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC17.05■□□□□ 0.32
APOEP02649 MIR346-201ENST00000362234 95 ntBASIC17.05■□□□□ 0.32
APOEP02649 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
APOEP02649 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC17.05■□□□□ 0.32
APOEP02649 AC142381.1-201ENST00000426099 345 ntBASIC17.05■□□□□ 0.32
APOEP02649 METTL21AP1-201ENST00000438852 635 ntBASIC17.05■□□□□ 0.32
APOEP02649 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
APOEP02649 AC093724.1-201ENST00000448659 1027 ntBASIC17.05■□□□□ 0.32
APOEP02649 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC17.05■□□□□ 0.32
APOEP02649 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
APOEP02649 DAD1-205ENST00000543337 501 ntTSL 3 BASIC17.05■□□□□ 0.32
APOEP02649 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
APOEP02649 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC17.05■□□□□ 0.32
APOEP02649 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
APOEP02649 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
APOEP02649 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
APOEP02649 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
APOEP02649 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
APOEP02649 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
APOEP02649 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
APOEP02649 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
APOEP02649 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC17.05■□□□□ 0.32
APOEP02649 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC17.05■□□□□ 0.32
APOEP02649 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
APOEP02649 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
APOEP02649 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
APOEP02649 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
APOEP02649 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
APOEP02649 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
APOEP02649 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
APOEP02649 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
APOEP02649 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
APOEP02649 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
APOEP02649 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
APOEP02649 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
APOEP02649 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
APOEP02649 LBH-203ENST00000404397 543 ntTSL 4 BASIC17.04■□□□□ 0.32
APOEP02649 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC17.04■□□□□ 0.32
APOEP02649 FAM58DP-201ENST00000428076 619 ntBASIC17.04■□□□□ 0.32
APOEP02649 RBPMS2P1-201ENST00000437762 623 ntBASIC17.04■□□□□ 0.32
APOEP02649 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC17.04■□□□□ 0.32
APOEP02649 POU5F1P6-201ENST00000466990 990 ntBASIC17.04■□□□□ 0.32
APOEP02649 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC17.04■□□□□ 0.32
APOEP02649 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC17.04■□□□□ 0.32
APOEP02649 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms