Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
TNFP01375 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
TNFP01375 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
TNFP01375 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC15.8■□□□□ 0.12
TNFP01375 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TNFP01375 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC15.8■□□□□ 0.12
TNFP01375 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
TNFP01375 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
TNFP01375 AL691432.1-201ENST00000596308 1422 ntBASIC15.8■□□□□ 0.12
TNFP01375 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
TNFP01375 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
TNFP01375 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TNFP01375 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
TNFP01375 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TNFP01375 SPDYE19P-201ENST00000338590 713 ntBASIC15.8■□□□□ 0.12
TNFP01375 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TNFP01375 AC004987.2-201ENST00000395959 1148 ntBASIC15.8■□□□□ 0.12
TNFP01375 RASL12-203ENST00000434605 982 ntTSL 2 BASIC15.8■□□□□ 0.12
TNFP01375 GNAQP1-201ENST00000444815 1067 ntBASIC15.8■□□□□ 0.12
TNFP01375 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC15.8■□□□□ 0.12
TNFP01375 FXR1-221ENST00000491674 365 ntTSL 2 BASIC15.8■□□□□ 0.12
TNFP01375 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC15.8■□□□□ 0.12
TNFP01375 AC243562.2-201ENST00000561247 970 ntBASIC15.8■□□□□ 0.12
TNFP01375 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC15.8■□□□□ 0.12
TNFP01375 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
TNFP01375 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC15.8■□□□□ 0.12
TNFP01375 AL109936.8-201ENST00000641772 604 ntBASIC15.8■□□□□ 0.12
TNFP01375 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TNFP01375 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC15.8■□□□□ 0.12
TNFP01375 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
TNFP01375 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TNFP01375 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC15.8■□□□□ 0.12
TNFP01375 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC15.8■□□□□ 0.12
TNFP01375 REXO1L8P-201ENST00000604378 1897 ntBASIC15.8■□□□□ 0.12
TNFP01375 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TNFP01375 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
TNFP01375 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TNFP01375 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TNFP01375 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC15.79■□□□□ 0.12
TNFP01375 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC15.79■□□□□ 0.12
TNFP01375 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
TNFP01375 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
TNFP01375 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TNFP01375 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC15.79■□□□□ 0.12
TNFP01375 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC15.79■□□□□ 0.12
TNFP01375 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
TNFP01375 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC15.79■□□□□ 0.12
TNFP01375 AC087499.6-201ENST00000411576 835 ntBASIC15.79■□□□□ 0.12
TNFP01375 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC15.79■□□□□ 0.12
TNFP01375 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC15.79■□□□□ 0.12
TNFP01375 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
TNFP01375 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
TNFP01375 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
TNFP01375 CFL1-212ENST00000531413 636 ntTSL 3 BASIC15.79■□□□□ 0.12
TNFP01375 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC15.79■□□□□ 0.12
TNFP01375 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC15.79■□□□□ 0.12
TNFP01375 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
TNFP01375 AC004461.2-201ENST00000629517 803 ntBASIC15.79■□□□□ 0.12
TNFP01375 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC15.79■□□□□ 0.12
TNFP01375 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
TNFP01375 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
TNFP01375 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
TNFP01375 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TNFP01375 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
TNFP01375 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TNFP01375 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
TNFP01375 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
TNFP01375 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
TNFP01375 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TNFP01375 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TNFP01375 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC15.79■□□□□ 0.12
TNFP01375 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
TNFP01375 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
TNFP01375 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
TNFP01375 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
TNFP01375 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC15.78■□□□□ 0.12
TNFP01375 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC15.78■□□□□ 0.12
TNFP01375 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
TNFP01375 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC15.78■□□□□ 0.12
TNFP01375 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TNFP01375 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TNFP01375 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
TNFP01375 ALOX12P2-203ENST00000570921 1945 ntBASIC15.78■□□□□ 0.12
TNFP01375 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
TNFP01375 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TNFP01375 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TNFP01375 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TNFP01375 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
TNFP01375 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TNFP01375 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC15.78■□□□□ 0.12
TNFP01375 AL391825.1-201ENST00000457671 1364 ntBASIC15.78■□□□□ 0.12
TNFP01375 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TNFP01375 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
TNFP01375 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC15.78■□□□□ 0.12
TNFP01375 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TNFP01375 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
TNFP01375 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TNFP01375 DFFBP1-201ENST00000433250 979 ntBASIC15.78■□□□□ 0.12
TNFP01375 PTK7-212ENST00000476760 902 ntTSL 2 BASIC15.78■□□□□ 0.12
TNFP01375 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 151.5 ms