Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LMX1BO60663 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LMX1BO60663 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
LMX1BO60663 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC14.34□□□□□ -0.11
LMX1BO60663 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
LMX1BO60663 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
LMX1BO60663 DBET-201ENST00000630918 3363 ntBASIC14.34□□□□□ -0.11
LMX1BO60663 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LMX1BO60663 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.11
LMX1BO60663 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
LMX1BO60663 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
LMX1BO60663 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
LMX1BO60663 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC14.33□□□□□ -0.11
LMX1BO60663 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC14.33□□□□□ -0.12
LMX1BO60663 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
LMX1BO60663 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LMX1BO60663 CDC14C-201ENST00000428251 1719 ntBASIC14.33□□□□□ -0.12
LMX1BO60663 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC14.33□□□□□ -0.12
LMX1BO60663 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC14.33□□□□□ -0.12
LMX1BO60663 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LMX1BO60663 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LMX1BO60663 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
LMX1BO60663 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
LMX1BO60663 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LMX1BO60663 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
LMX1BO60663 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LMX1BO60663 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC14.33□□□□□ -0.12
LMX1BO60663 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC14.33□□□□□ -0.12
LMX1BO60663 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC14.33□□□□□ -0.12
LMX1BO60663 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC14.33□□□□□ -0.12
LMX1BO60663 POU5F1P6-201ENST00000466990 990 ntBASIC14.33□□□□□ -0.12
LMX1BO60663 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC14.33□□□□□ -0.12
LMX1BO60663 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC14.33□□□□□ -0.12
LMX1BO60663 CIPC-205ENST00000555437 566 ntTSL 3 BASIC14.33□□□□□ -0.12
LMX1BO60663 AL031432.2-201ENST00000566714 459 ntBASIC14.33□□□□□ -0.12
LMX1BO60663 AL928711.1-201ENST00000570165 459 ntBASIC14.33□□□□□ -0.12
LMX1BO60663 OR7E47P-204ENST00000575924 449 ntBASIC14.33□□□□□ -0.12
LMX1BO60663 AC005412.3-201ENST00000580309 715 ntBASIC14.33□□□□□ -0.12
LMX1BO60663 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC14.33□□□□□ -0.12
LMX1BO60663 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC14.33□□□□□ -0.12
LMX1BO60663 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
LMX1BO60663 AC007064.4-201ENST00000637740 555 ntBASIC14.33□□□□□ -0.12
LMX1BO60663 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
LMX1BO60663 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LMX1BO60663 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC14.33□□□□□ -0.12
LMX1BO60663 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
LMX1BO60663 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
LMX1BO60663 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LMX1BO60663 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
LMX1BO60663 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC14.33□□□□□ -0.12
LMX1BO60663 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC14.33□□□□□ -0.12
LMX1BO60663 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
LMX1BO60663 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
LMX1BO60663 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
LMX1BO60663 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC14.33□□□□□ -0.12
LMX1BO60663 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LMX1BO60663 AP003680.1-201ENST00000598970 3660 ntBASIC14.33□□□□□ -0.12
LMX1BO60663 LINC02447-202ENST00000501888 2146 ntBASIC14.32□□□□□ -0.12
LMX1BO60663 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC14.32□□□□□ -0.12
LMX1BO60663 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC14.32□□□□□ -0.12
LMX1BO60663 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LMX1BO60663 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
LMX1BO60663 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC14.32□□□□□ -0.12
LMX1BO60663 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
LMX1BO60663 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
LMX1BO60663 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
LMX1BO60663 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LMX1BO60663 NEK7-201ENST00000367383 586 ntTSL 2 BASIC14.32□□□□□ -0.12
LMX1BO60663 TSEN15P1-201ENST00000423257 515 ntBASIC14.32□□□□□ -0.12
LMX1BO60663 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC14.32□□□□□ -0.12
LMX1BO60663 FAM58CP-201ENST00000435741 640 ntBASIC14.32□□□□□ -0.12
LMX1BO60663 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LMX1BO60663 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC14.32□□□□□ -0.12
LMX1BO60663 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC14.32□□□□□ -0.12
LMX1BO60663 AP000344.2-201ENST00000512987 629 ntBASIC14.32□□□□□ -0.12
LMX1BO60663 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC14.32□□□□□ -0.12
LMX1BO60663 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC14.32□□□□□ -0.12
LMX1BO60663 PUS1-205ENST00000535067 838 ntTSL 3 BASIC14.32□□□□□ -0.12
LMX1BO60663 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LMX1BO60663 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC14.32□□□□□ -0.12
LMX1BO60663 AC004449.1-201ENST00000564240 433 ntBASIC14.32□□□□□ -0.12
LMX1BO60663 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
LMX1BO60663 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC14.32□□□□□ -0.12
LMX1BO60663 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC14.32□□□□□ -0.12
LMX1BO60663 AP001350.2-201ENST00000625104 1094 ntBASIC14.32□□□□□ -0.12
LMX1BO60663 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
LMX1BO60663 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
LMX1BO60663 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
LMX1BO60663 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC14.32□□□□□ -0.12
LMX1BO60663 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
LMX1BO60663 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC14.32□□□□□ -0.12
LMX1BO60663 AC129492.6-201ENST00000611383 1305 ntBASIC14.32□□□□□ -0.12
LMX1BO60663 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LMX1BO60663 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LMX1BO60663 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC14.32□□□□□ -0.12
LMX1BO60663 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
LMX1BO60663 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
LMX1BO60663 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
LMX1BO60663 TSPY26P-202ENST00000565928 3884 ntBASIC14.32□□□□□ -0.12
LMX1BO60663 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms