Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 AC011467.2-201ENST00000598425 242 ntBASIC11.95□□□□□ -0.5
SMKR1H3BMG3 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 ABBA01031661.1-201ENST00000634362 1253 ntBASIC11.95□□□□□ -0.5
SMKR1H3BMG3 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 POLL-217ENST00000628479 1953 ntTSL 5 BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC11.95□□□□□ -0.5
SMKR1H3BMG3 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC11.94□□□□□ -0.5
SMKR1H3BMG3 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
SMKR1H3BMG3 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
SMKR1H3BMG3 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC11.94□□□□□ -0.5
SMKR1H3BMG3 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
SMKR1H3BMG3 TMBIM7P-203ENST00000641617 1718 ntBASIC11.94□□□□□ -0.5
SMKR1H3BMG3 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC11.94□□□□□ -0.5
SMKR1H3BMG3 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC11.94□□□□□ -0.5
SMKR1H3BMG3 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
SMKR1H3BMG3 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
SMKR1H3BMG3 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC11.94□□□□□ -0.5
SMKR1H3BMG3 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
SMKR1H3BMG3 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC11.94□□□□□ -0.5
SMKR1H3BMG3 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
SMKR1H3BMG3 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC11.94□□□□□ -0.5
SMKR1H3BMG3 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
SMKR1H3BMG3 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
SMKR1H3BMG3 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC11.94□□□□□ -0.5
SMKR1H3BMG3 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
SMKR1H3BMG3 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
SMKR1H3BMG3 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
SMKR1H3BMG3 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC11.94□□□□□ -0.5
SMKR1H3BMG3 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
SMKR1H3BMG3 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC11.94□□□□□ -0.5
SMKR1H3BMG3 MIR4497-201ENST00000583208 89 ntBASIC11.94□□□□□ -0.5
SMKR1H3BMG3 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC11.94□□□□□ -0.5
SMKR1H3BMG3 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC11.94□□□□□ -0.5
SMKR1H3BMG3 HYMAI.1-201ENST00000620949 238 ntBASIC11.94□□□□□ -0.5
SMKR1H3BMG3 DFFB-212ENST00000625756 649 ntTSL 5 BASIC11.94□□□□□ -0.5
SMKR1H3BMG3 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
SMKR1H3BMG3 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.5
SMKR1H3BMG3 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
SMKR1H3BMG3 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
SMKR1H3BMG3 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC11.94□□□□□ -0.5
SMKR1H3BMG3 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC11.94□□□□□ -0.5
SMKR1H3BMG3 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
SMKR1H3BMG3 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
SMKR1H3BMG3 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC11.94□□□□□ -0.5
SMKR1H3BMG3 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC11.94□□□□□ -0.5
SMKR1H3BMG3 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC11.94□□□□□ -0.5
SMKR1H3BMG3 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
SMKR1H3BMG3 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC11.94□□□□□ -0.5
SMKR1H3BMG3 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
SMKR1H3BMG3 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
SMKR1H3BMG3 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
SMKR1H3BMG3 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
SMKR1H3BMG3 COCH-203ENST00000460581 2688 ntTSL 2 BASIC11.94□□□□□ -0.5
SMKR1H3BMG3 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
SMKR1H3BMG3 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
SMKR1H3BMG3 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
SMKR1H3BMG3 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
SMKR1H3BMG3 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
SMKR1H3BMG3 TOP3BP1-201ENST00000420768 1380 ntBASIC11.93□□□□□ -0.5
SMKR1H3BMG3 AC092919.2-201ENST00000623631 1645 ntBASIC11.93□□□□□ -0.5
SMKR1H3BMG3 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
SMKR1H3BMG3 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
SMKR1H3BMG3 AL359258.3-201ENST00000622910 2331 ntBASIC11.93□□□□□ -0.5
SMKR1H3BMG3 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
SMKR1H3BMG3 PMPCAP1-201ENST00000508114 1576 ntBASIC11.93□□□□□ -0.5
SMKR1H3BMG3 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC11.93□□□□□ -0.5
SMKR1H3BMG3 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
SMKR1H3BMG3 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC11.93□□□□□ -0.5
SMKR1H3BMG3 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
SMKR1H3BMG3 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC11.93□□□□□ -0.5
SMKR1H3BMG3 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC11.93□□□□□ -0.5
SMKR1H3BMG3 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
SMKR1H3BMG3 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
SMKR1H3BMG3 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
SMKR1H3BMG3 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms