Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC16.33■□□□□ 0.21
TRIM49D1C9J1S8 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC16.33■□□□□ 0.21
TRIM49D1C9J1S8 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
TRIM49D1C9J1S8 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC16.33■□□□□ 0.21
TRIM49D1C9J1S8 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
TRIM49D1C9J1S8 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
TRIM49D1C9J1S8 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC16.33■□□□□ 0.21
TRIM49D1C9J1S8 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC16.33■□□□□ 0.21
TRIM49D1C9J1S8 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.21
TRIM49D1C9J1S8 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRIM49D1C9J1S8 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TRIM49D1C9J1S8 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
TRIM49D1C9J1S8 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TRIM49D1C9J1S8 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRIM49D1C9J1S8 RNU1-129P-201ENST00000384064 167 ntBASIC16.33■□□□□ 0.2
TRIM49D1C9J1S8 UPK3BP1-201ENST00000428678 509 ntBASIC16.33■□□□□ 0.2
TRIM49D1C9J1S8 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC16.33■□□□□ 0.2
TRIM49D1C9J1S8 SKP2-204ENST00000508514 821 ntTSL 3 BASIC16.33■□□□□ 0.2
TRIM49D1C9J1S8 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC16.33■□□□□ 0.2
TRIM49D1C9J1S8 PRELID1P1-202ENST00000567272 903 ntBASIC16.33■□□□□ 0.2
TRIM49D1C9J1S8 OR7E47P-204ENST00000575924 449 ntBASIC16.33■□□□□ 0.2
TRIM49D1C9J1S8 PRR29-207ENST00000580752 458 ntTSL 3 BASIC16.33■□□□□ 0.2
TRIM49D1C9J1S8 U1.21-201ENST00000580816 167 ntBASIC16.33■□□□□ 0.2
TRIM49D1C9J1S8 MIR4515-201ENST00000584082 81 ntBASIC16.33■□□□□ 0.2
TRIM49D1C9J1S8 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC16.33■□□□□ 0.2
TRIM49D1C9J1S8 AC021097.1-201ENST00000607902 574 ntBASIC16.33■□□□□ 0.2
TRIM49D1C9J1S8 ACTL9-202ENST00000612068 1252 ntBASIC16.33■□□□□ 0.2
TRIM49D1C9J1S8 MIR1199-201ENST00000621445 119 ntBASIC16.33■□□□□ 0.2
TRIM49D1C9J1S8 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC16.33■□□□□ 0.2
TRIM49D1C9J1S8 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
TRIM49D1C9J1S8 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC16.33■□□□□ 0.2
TRIM49D1C9J1S8 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRIM49D1C9J1S8 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC16.33■□□□□ 0.2
TRIM49D1C9J1S8 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRIM49D1C9J1S8 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
TRIM49D1C9J1S8 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRIM49D1C9J1S8 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM49D1C9J1S8 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC16.32■□□□□ 0.2
TRIM49D1C9J1S8 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC16.32■□□□□ 0.2
TRIM49D1C9J1S8 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM49D1C9J1S8 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
TRIM49D1C9J1S8 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM49D1C9J1S8 AC067930.6-201ENST00000623257 4947 ntBASIC16.32■□□□□ 0.2
TRIM49D1C9J1S8 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM49D1C9J1S8 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM49D1C9J1S8 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM49D1C9J1S8 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM49D1C9J1S8 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
TRIM49D1C9J1S8 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
TRIM49D1C9J1S8 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM49D1C9J1S8 MRPL20P1-201ENST00000400819 433 ntBASIC16.32■□□□□ 0.2
TRIM49D1C9J1S8 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
TRIM49D1C9J1S8 VMO1-203ENST00000416307 712 ntTSL 2 BASIC16.32■□□□□ 0.2
TRIM49D1C9J1S8 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
TRIM49D1C9J1S8 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM49D1C9J1S8 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC16.32■□□□□ 0.2
TRIM49D1C9J1S8 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM49D1C9J1S8 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC16.32■□□□□ 0.2
TRIM49D1C9J1S8 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
TRIM49D1C9J1S8 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC16.32■□□□□ 0.2
TRIM49D1C9J1S8 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC16.32■□□□□ 0.2
TRIM49D1C9J1S8 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC16.32■□□□□ 0.2
TRIM49D1C9J1S8 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM49D1C9J1S8 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
TRIM49D1C9J1S8 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM49D1C9J1S8 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM49D1C9J1S8 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM49D1C9J1S8 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM49D1C9J1S8 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM49D1C9J1S8 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC16.32■□□□□ 0.2
TRIM49D1C9J1S8 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC16.32■□□□□ 0.2
TRIM49D1C9J1S8 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM49D1C9J1S8 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM49D1C9J1S8 RELA-227ENST00000615805 2236 ntTSL 5 BASIC16.31■□□□□ 0.2
TRIM49D1C9J1S8 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC16.31■□□□□ 0.2
TRIM49D1C9J1S8 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM49D1C9J1S8 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC16.31■□□□□ 0.2
TRIM49D1C9J1S8 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC16.31■□□□□ 0.2
TRIM49D1C9J1S8 AC020658.6-201ENST00000623564 1870 ntBASIC16.31■□□□□ 0.2
TRIM49D1C9J1S8 AC006058.4-201ENST00000624016 1670 ntBASIC16.31■□□□□ 0.2
TRIM49D1C9J1S8 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM49D1C9J1S8 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM49D1C9J1S8 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM49D1C9J1S8 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM49D1C9J1S8 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM49D1C9J1S8 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM49D1C9J1S8 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC16.31■□□□□ 0.2
TRIM49D1C9J1S8 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM49D1C9J1S8 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM49D1C9J1S8 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM49D1C9J1S8 HMGA1P7-201ENST00000406908 502 ntBASIC16.31■□□□□ 0.2
TRIM49D1C9J1S8 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC16.31■□□□□ 0.2
TRIM49D1C9J1S8 TPM1-226ENST00000560959 925 ntTSL 2 BASIC16.31■□□□□ 0.2
TRIM49D1C9J1S8 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC16.31■□□□□ 0.2
TRIM49D1C9J1S8 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM49D1C9J1S8 METTL23-204ENST00000586752 904 ntTSL 2 BASIC16.31■□□□□ 0.2
TRIM49D1C9J1S8 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM49D1C9J1S8 AL356488.2-201ENST00000602755 427 ntBASIC16.31■□□□□ 0.2
TRIM49D1C9J1S8 AL031055.1-201ENST00000606362 631 ntBASIC16.31■□□□□ 0.2
TRIM49D1C9J1S8 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms