Protein–RNA interactions for Protein: Q969G3

SMARCE1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1, humanhuman

Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1Q969G3 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SMARCE1Q969G3 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
SMARCE1Q969G3 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SMARCE1Q969G3 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SMARCE1Q969G3 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
SMARCE1Q969G3 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC18.4■□□□□ 0.54
SMARCE1Q969G3 HLA-DQB2-231ENST00000435145 2026 ntBASIC18.4■□□□□ 0.54
SMARCE1Q969G3 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC18.4■□□□□ 0.54
SMARCE1Q969G3 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SMARCE1Q969G3 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
SMARCE1Q969G3 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC18.4■□□□□ 0.54
SMARCE1Q969G3 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
SMARCE1Q969G3 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC18.39■□□□□ 0.54
SMARCE1Q969G3 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
SMARCE1Q969G3 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
SMARCE1Q969G3 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SMARCE1Q969G3 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SMARCE1Q969G3 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SMARCE1Q969G3 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SMARCE1Q969G3 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
SMARCE1Q969G3 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC18.39■□□□□ 0.53
SMARCE1Q969G3 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SMARCE1Q969G3 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC18.39■□□□□ 0.53
SMARCE1Q969G3 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SMARCE1Q969G3 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SMARCE1Q969G3 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
SMARCE1Q969G3 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC18.39■□□□□ 0.53
SMARCE1Q969G3 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC18.39■□□□□ 0.53
SMARCE1Q969G3 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC18.39■□□□□ 0.53
SMARCE1Q969G3 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
SMARCE1Q969G3 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
SMARCE1Q969G3 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
SMARCE1Q969G3 AC079781.3-201ENST00000449110 356 ntBASIC18.39■□□□□ 0.53
SMARCE1Q969G3 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC18.39■□□□□ 0.53
SMARCE1Q969G3 AL513480.1-201ENST00000451731 511 ntBASIC18.39■□□□□ 0.53
SMARCE1Q969G3 AC108751.1-201ENST00000490852 363 ntBASIC18.39■□□□□ 0.53
SMARCE1Q969G3 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC18.39■□□□□ 0.53
SMARCE1Q969G3 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
SMARCE1Q969G3 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
SMARCE1Q969G3 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC18.39■□□□□ 0.53
SMARCE1Q969G3 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
SMARCE1Q969G3 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC18.39■□□□□ 0.53
SMARCE1Q969G3 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC18.39■□□□□ 0.53
SMARCE1Q969G3 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC18.39■□□□□ 0.53
SMARCE1Q969G3 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
SMARCE1Q969G3 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
SMARCE1Q969G3 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SMARCE1Q969G3 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
SMARCE1Q969G3 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC18.39■□□□□ 0.53
SMARCE1Q969G3 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SMARCE1Q969G3 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
SMARCE1Q969G3 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
SMARCE1Q969G3 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC18.39■□□□□ 0.53
SMARCE1Q969G3 U82695.1-201ENST00000635752 1889 ntBASIC18.39■□□□□ 0.53
SMARCE1Q969G3 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
SMARCE1Q969G3 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
SMARCE1Q969G3 DBET-201ENST00000630918 3363 ntBASIC18.39■□□□□ 0.53
SMARCE1Q969G3 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC18.39■□□□□ 0.53
SMARCE1Q969G3 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC18.39■□□□□ 0.53
SMARCE1Q969G3 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SMARCE1Q969G3 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SMARCE1Q969G3 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
SMARCE1Q969G3 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
SMARCE1Q969G3 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMARCE1Q969G3 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC18.38■□□□□ 0.53
SMARCE1Q969G3 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMARCE1Q969G3 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMARCE1Q969G3 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SMARCE1Q969G3 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMARCE1Q969G3 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMARCE1Q969G3 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMARCE1Q969G3 PMS2P4-201ENST00000412466 1052 ntBASIC18.38■□□□□ 0.53
SMARCE1Q969G3 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SMARCE1Q969G3 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC18.38■□□□□ 0.53
SMARCE1Q969G3 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMARCE1Q969G3 AL031432.2-201ENST00000566714 459 ntBASIC18.38■□□□□ 0.53
SMARCE1Q969G3 AL928711.1-201ENST00000570165 459 ntBASIC18.38■□□□□ 0.53
SMARCE1Q969G3 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMARCE1Q969G3 MIR3909-201ENST00000579518 119 ntBASIC18.38■□□□□ 0.53
SMARCE1Q969G3 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SMARCE1Q969G3 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SMARCE1Q969G3 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC18.38■□□□□ 0.53
SMARCE1Q969G3 AL645728.2-201ENST00000641974 660 ntBASIC18.38■□□□□ 0.53
SMARCE1Q969G3 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMARCE1Q969G3 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMARCE1Q969G3 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SMARCE1Q969G3 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMARCE1Q969G3 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMARCE1Q969G3 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMARCE1Q969G3 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC18.38■□□□□ 0.53
SMARCE1Q969G3 BID-213ENST00000615414 2236 ntTSL 5 BASIC18.38■□□□□ 0.53
SMARCE1Q969G3 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SMARCE1Q969G3 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMARCE1Q969G3 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC18.38■□□□□ 0.53
SMARCE1Q969G3 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC18.38■□□□□ 0.53
SMARCE1Q969G3 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMARCE1Q969G3 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
SMARCE1Q969G3 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SMARCE1Q969G3 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
SMARCE1Q969G3 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 56.1 ms