Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC26.67■■□□□ 1.86
CUX1P39880 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC26.67■■□□□ 1.86
CUX1P39880 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC26.67■■□□□ 1.86
CUX1P39880 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC26.67■■□□□ 1.86
CUX1P39880 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC26.67■■□□□ 1.86
CUX1P39880 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
CUX1P39880 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC26.67■■□□□ 1.86
CUX1P39880 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC26.67■■□□□ 1.86
CUX1P39880 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC26.67■■□□□ 1.86
CUX1P39880 ACTG1P17-201ENST00000558391 1119 ntBASIC26.67■■□□□ 1.86
CUX1P39880 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
CUX1P39880 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC26.67■■□□□ 1.86
CUX1P39880 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC26.67■■□□□ 1.86
CUX1P39880 CYP2AB1P-202ENST00000454440 1456 ntBASIC26.67■■□□□ 1.86
CUX1P39880 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC26.67■■□□□ 1.86
CUX1P39880 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC26.67■■□□□ 1.86
CUX1P39880 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC26.67■■□□□ 1.86
CUX1P39880 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
CUX1P39880 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
CUX1P39880 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC26.66■■□□□ 1.86
CUX1P39880 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
CUX1P39880 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC26.66■■□□□ 1.86
CUX1P39880 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
CUX1P39880 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
CUX1P39880 AC006001.1-201ENST00000325130 474 ntBASIC26.66■■□□□ 1.86
CUX1P39880 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
CUX1P39880 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC26.66■■□□□ 1.86
CUX1P39880 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC26.66■■□□□ 1.86
CUX1P39880 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC26.66■■□□□ 1.86
CUX1P39880 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
CUX1P39880 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC26.66■■□□□ 1.86
CUX1P39880 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC26.66■■□□□ 1.86
CUX1P39880 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC26.66■■□□□ 1.86
CUX1P39880 AC091271.1-201ENST00000611877 1162 ntBASIC26.66■■□□□ 1.86
CUX1P39880 AC138951.2-201ENST00000623455 1161 ntBASIC26.66■■□□□ 1.86
CUX1P39880 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC26.66■■□□□ 1.86
CUX1P39880 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
CUX1P39880 AMT-233ENST00000636522 1620 ntTSL 2 BASIC26.66■■□□□ 1.86
CUX1P39880 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
CUX1P39880 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
CUX1P39880 AP001094.4-201ENST00000579008 2176 ntBASIC26.66■■□□□ 1.86
CUX1P39880 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
CUX1P39880 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
CUX1P39880 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
CUX1P39880 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
CUX1P39880 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC26.65■■□□□ 1.86
CUX1P39880 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
CUX1P39880 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC26.65■■□□□ 1.86
CUX1P39880 AL591846.1-201ENST00000451736 433 ntBASIC26.65■■□□□ 1.86
CUX1P39880 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC26.65■■□□□ 1.86
CUX1P39880 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC26.65■■□□□ 1.86
CUX1P39880 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC26.65■■□□□ 1.86
CUX1P39880 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC26.65■■□□□ 1.86
CUX1P39880 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC26.65■■□□□ 1.86
CUX1P39880 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
CUX1P39880 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
CUX1P39880 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC26.65■■□□□ 1.86
CUX1P39880 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC26.65■■□□□ 1.86
CUX1P39880 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC26.65■■□□□ 1.86
CUX1P39880 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
CUX1P39880 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
CUX1P39880 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
CUX1P39880 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC26.65■■□□□ 1.86
CUX1P39880 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC26.65■■□□□ 1.86
CUX1P39880 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC26.65■■□□□ 1.86
CUX1P39880 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC26.65■■□□□ 1.86
CUX1P39880 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC26.65■■□□□ 1.86
CUX1P39880 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
CUX1P39880 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC26.64■■□□□ 1.86
CUX1P39880 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC26.64■■□□□ 1.86
CUX1P39880 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC26.64■■□□□ 1.86
CUX1P39880 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
CUX1P39880 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC26.64■■□□□ 1.86
CUX1P39880 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
CUX1P39880 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC26.64■■□□□ 1.85
CUX1P39880 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
CUX1P39880 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC26.64■■□□□ 1.85
CUX1P39880 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC26.64■■□□□ 1.85
CUX1P39880 Z93015.1-201ENST00000451718 390 ntBASIC26.64■■□□□ 1.85
CUX1P39880 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC26.64■■□□□ 1.85
CUX1P39880 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC26.64■■□□□ 1.85
CUX1P39880 AHRR-211ENST00000515206 462 ntTSL 5 BASIC26.64■■□□□ 1.85
CUX1P39880 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC26.64■■□□□ 1.85
CUX1P39880 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC26.64■■□□□ 1.85
CUX1P39880 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC26.64■■□□□ 1.85
CUX1P39880 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC26.64■■□□□ 1.85
CUX1P39880 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC26.64■■□□□ 1.85
CUX1P39880 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
CUX1P39880 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
CUX1P39880 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
CUX1P39880 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC26.63■■□□□ 1.85
CUX1P39880 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC26.63■■□□□ 1.85
CUX1P39880 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC26.63■■□□□ 1.85
CUX1P39880 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC26.63■■□□□ 1.85
CUX1P39880 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
CUX1P39880 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
CUX1P39880 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
CUX1P39880 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC26.63■■□□□ 1.85
CUX1P39880 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
CUX1P39880 AC091804.1-201ENST00000486888 567 ntBASIC26.63■■□□□ 1.85
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms