Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
SHMT2P34897 LINC01225-203ENST00000563550 1244 ntBASIC15.98■□□□□ 0.15
SHMT2P34897 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC15.98■□□□□ 0.15
SHMT2P34897 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC15.98■□□□□ 0.15
SHMT2P34897 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC15.98■□□□□ 0.15
SHMT2P34897 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
SHMT2P34897 GCK-202ENST00000345378 2421 ntTSL 2 BASIC15.98■□□□□ 0.15
SHMT2P34897 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC15.98■□□□□ 0.15
SHMT2P34897 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SHMT2P34897 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SHMT2P34897 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
SHMT2P34897 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
SHMT2P34897 UXT-AS1-201ENST00000590504 1525 ntBASIC15.98■□□□□ 0.15
SHMT2P34897 GOLGA6L17P-202ENST00000614358 1398 ntBASIC15.98■□□□□ 0.15
SHMT2P34897 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC15.98■□□□□ 0.15
SHMT2P34897 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC15.98■□□□□ 0.15
SHMT2P34897 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SHMT2P34897 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
SHMT2P34897 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
SHMT2P34897 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SHMT2P34897 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
SHMT2P34897 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC15.97■□□□□ 0.15
SHMT2P34897 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SHMT2P34897 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SHMT2P34897 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC15.97■□□□□ 0.15
SHMT2P34897 AC023824.1-201ENST00000562945 2975 ntBASIC15.97■□□□□ 0.15
SHMT2P34897 LINC01144-201ENST00000626198 1710 ntBASIC15.97■□□□□ 0.15
SHMT2P34897 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SHMT2P34897 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
SHMT2P34897 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SHMT2P34897 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SHMT2P34897 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SHMT2P34897 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
SHMT2P34897 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC15.97■□□□□ 0.15
SHMT2P34897 PTMS-202ENST00000389462 773 ntTSL 2 BASIC15.97■□□□□ 0.15
SHMT2P34897 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
SHMT2P34897 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC15.97■□□□□ 0.15
SHMT2P34897 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC15.97■□□□□ 0.15
SHMT2P34897 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC15.97■□□□□ 0.15
SHMT2P34897 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
SHMT2P34897 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC15.97■□□□□ 0.15
SHMT2P34897 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC15.97■□□□□ 0.15
SHMT2P34897 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC15.97■□□□□ 0.15
SHMT2P34897 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC15.97■□□□□ 0.15
SHMT2P34897 AC073389.1-201ENST00000595595 795 ntBASIC15.97■□□□□ 0.15
SHMT2P34897 AC027612.4-201ENST00000605371 583 ntBASIC15.97■□□□□ 0.15
SHMT2P34897 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC15.97■□□□□ 0.15
SHMT2P34897 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC15.97■□□□□ 0.15
SHMT2P34897 AC084121.4-201ENST00000641598 221 ntBASIC15.97■□□□□ 0.15
SHMT2P34897 AF228730.8-201ENST00000642140 221 ntBASIC15.97■□□□□ 0.15
SHMT2P34897 AL365203.3-201ENST00000609742 2057 ntBASIC15.97■□□□□ 0.15
SHMT2P34897 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SHMT2P34897 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC15.97■□□□□ 0.15
SHMT2P34897 AC073439.1-201ENST00000624121 1774 ntBASIC15.97■□□□□ 0.15
SHMT2P34897 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
SHMT2P34897 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
SHMT2P34897 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SHMT2P34897 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
SHMT2P34897 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC15.97■□□□□ 0.15
SHMT2P34897 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC15.96■□□□□ 0.15
SHMT2P34897 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
SHMT2P34897 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
SHMT2P34897 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
SHMT2P34897 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC15.96■□□□□ 0.15
SHMT2P34897 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
SHMT2P34897 MBP-202ENST00000355994 2772 ntTSL 5 BASIC15.96■□□□□ 0.15
SHMT2P34897 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC15.96■□□□□ 0.15
SHMT2P34897 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC15.96■□□□□ 0.15
SHMT2P34897 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
SHMT2P34897 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC15.96■□□□□ 0.15
SHMT2P34897 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
SHMT2P34897 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
SHMT2P34897 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC15.96■□□□□ 0.15
SHMT2P34897 CBR1-202ENST00000399191 838 ntTSL 3 BASIC15.96■□□□□ 0.15
SHMT2P34897 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC15.96■□□□□ 0.15
SHMT2P34897 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC15.96■□□□□ 0.15
SHMT2P34897 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
SHMT2P34897 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
SHMT2P34897 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC15.96■□□□□ 0.15
SHMT2P34897 AC093520.2-201ENST00000561830 333 ntBASIC15.96■□□□□ 0.15
SHMT2P34897 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC15.96■□□□□ 0.15
SHMT2P34897 AL138918.1-201ENST00000568306 659 ntBASIC15.96■□□□□ 0.15
SHMT2P34897 AP000842.3-202ENST00000569238 1080 ntBASIC15.96■□□□□ 0.15
SHMT2P34897 NKG7-205ENST00000600427 520 ntTSL 3 BASIC15.96■□□□□ 0.15
SHMT2P34897 AC009093.7-201ENST00000623853 1223 ntBASIC15.96■□□□□ 0.15
SHMT2P34897 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC15.96■□□□□ 0.15
SHMT2P34897 AC005052.1-201ENST00000625181 2492 ntBASIC15.96■□□□□ 0.15
SHMT2P34897 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC15.96■□□□□ 0.15
SHMT2P34897 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.14
SHMT2P34897 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.14
SHMT2P34897 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
SHMT2P34897 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
SHMT2P34897 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.14
SHMT2P34897 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
SHMT2P34897 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SHMT2P34897 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC15.95■□□□□ 0.14
SHMT2P34897 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SHMT2P34897 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC15.95■□□□□ 0.14
SHMT2P34897 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC15.95■□□□□ 0.14
SHMT2P34897 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC15.95■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 65 ms