Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
LIG1P18858 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LIG1P18858 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
LIG1P18858 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LIG1P18858 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
LIG1P18858 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC18.79■□□□□ 0.6
LIG1P18858 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIG1P18858 TSPY26P-202ENST00000565928 3884 ntBASIC18.78■□□□□ 0.6
LIG1P18858 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.6
LIG1P18858 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIG1P18858 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
LIG1P18858 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LIG1P18858 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC18.78■□□□□ 0.6
LIG1P18858 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIG1P18858 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIG1P18858 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LIG1P18858 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIG1P18858 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
LIG1P18858 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC18.78■□□□□ 0.6
LIG1P18858 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIG1P18858 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC18.78■□□□□ 0.6
LIG1P18858 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC18.78■□□□□ 0.6
LIG1P18858 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIG1P18858 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIG1P18858 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LIG1P18858 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC18.78■□□□□ 0.6
LIG1P18858 MAL2-202ENST00000531508 892 ntTSL 3 BASIC18.78■□□□□ 0.6
LIG1P18858 AC092865.5-201ENST00000545435 363 ntBASIC18.78■□□□□ 0.6
LIG1P18858 AC087641.1-201ENST00000557561 1021 ntBASIC18.78■□□□□ 0.6
LIG1P18858 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC18.78■□□□□ 0.6
LIG1P18858 OR7E47P-204ENST00000575924 449 ntBASIC18.78■□□□□ 0.6
LIG1P18858 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC18.78■□□□□ 0.6
LIG1P18858 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIG1P18858 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LIG1P18858 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC18.78■□□□□ 0.6
LIG1P18858 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIG1P18858 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIG1P18858 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC18.78■□□□□ 0.6
LIG1P18858 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIG1P18858 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC18.77■□□□□ 0.6
LIG1P18858 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIG1P18858 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC18.77■□□□□ 0.6
LIG1P18858 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC18.77■□□□□ 0.6
LIG1P18858 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LIG1P18858 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIG1P18858 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC18.77■□□□□ 0.6
LIG1P18858 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIG1P18858 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIG1P18858 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIG1P18858 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
LIG1P18858 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.6
LIG1P18858 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC18.77■□□□□ 0.6
LIG1P18858 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC18.77■□□□□ 0.6
LIG1P18858 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC18.77■□□□□ 0.6
LIG1P18858 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC18.77■□□□□ 0.6
LIG1P18858 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC18.77■□□□□ 0.6
LIG1P18858 BSG-214ENST00000614867 960 ntTSL 3 BASIC18.77■□□□□ 0.6
LIG1P18858 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LIG1P18858 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC18.77■□□□□ 0.6
LIG1P18858 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC18.77■□□□□ 0.6
LIG1P18858 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC18.77■□□□□ 0.6
LIG1P18858 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
LIG1P18858 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIG1P18858 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LIG1P18858 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIG1P18858 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC18.77■□□□□ 0.6
LIG1P18858 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
LIG1P18858 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
LIG1P18858 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC18.77■□□□□ 0.59
LIG1P18858 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
LIG1P18858 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
LIG1P18858 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
LIG1P18858 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIG1P18858 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LIG1P18858 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LIG1P18858 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIG1P18858 PPT1-215ENST00000641471 2368 ntBASIC18.76■□□□□ 0.59
LIG1P18858 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIG1P18858 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC18.76■□□□□ 0.59
LIG1P18858 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIG1P18858 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
LIG1P18858 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIG1P18858 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIG1P18858 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIG1P18858 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC18.76■□□□□ 0.59
LIG1P18858 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
LIG1P18858 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LIG1P18858 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC18.76■□□□□ 0.59
LIG1P18858 IGLL3P-201ENST00000412472 434 ntBASIC18.76■□□□□ 0.59
LIG1P18858 CDK2AP2P3-201ENST00000422476 372 ntBASIC18.76■□□□□ 0.59
LIG1P18858 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC18.76■□□□□ 0.59
LIG1P18858 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC18.76■□□□□ 0.59
LIG1P18858 PRSS29P-201ENST00000440800 595 ntBASIC18.76■□□□□ 0.59
LIG1P18858 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC18.76■□□□□ 0.59
LIG1P18858 HCG4B-203ENST00000450128 991 ntBASIC18.76■□□□□ 0.59
LIG1P18858 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC18.76■□□□□ 0.59
LIG1P18858 NMU-202ENST00000505262 693 ntTSL 3 BASIC18.76■□□□□ 0.59
LIG1P18858 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LIG1P18858 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC18.76■□□□□ 0.59
LIG1P18858 POLD4-207ENST00000531239 584 ntTSL 2 BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms