Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.441e-9■□□□□ 10.9
YBX3P16989 TM9SF4-207ENST00000495749 3023 ntTSL 29.72□□□□□ -0.853e-7■□□□□ 10.9
YBX3P16989 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC26.16■■□□□ 1.786e-8■□□□□ 10.9
YBX3P16989 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC26.16■■□□□ 1.786e-8■□□□□ 10.9
YBX3P16989 DLD-213ENST00000494441 707 ntTSL 325.49■■□□□ 1.672e-7■□□□□ 10.9
YBX3P16989 YIPF4-204ENST00000495355 544 ntTSL 224.62■■□□□ 1.532e-7■□□□□ 10.9
YBX3P16989 YIPF4-201ENST00000238831 11949 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -12e-7■□□□□ 10.9
YBX3P16989 CNN2-206ENST00000564572 2266 nt16.18■□□□□ 0.184e-12■□□□□ 10.9
YBX3P16989 PEBP1-202ENST00000542939 708 ntTSL 320.7■□□□□ 0.94e-7■□□□□ 10.9
YBX3P16989 MED8-202ENST00000372455 1186 ntTSL 1 (best) BASIC13.32□□□□□ -0.281e-9■□□□□ 10.9
YBX3P16989 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC24.77■■□□□ 1.562e-22■□□□□ 10.9
YBX3P16989 CCNG1-213ENST00000514367 573 ntTSL 26.96□□□□□ -1.32e-22■□□□□ 10.9
YBX3P16989 STAU2-212ENST00000521419 972 ntTSL 1 (best) BASIC17.44■□□□□ 0.382e-6■□□□□ 10.9
YBX3P16989 STAU2-228ENST00000524191 808 ntTSL 316.98■□□□□ 0.312e-6■□□□□ 10.9
YBX3P16989 STAU2-226ENST00000524104 2173 ntTSL 1 (best) BASIC8.66□□□□□ -1.022e-6■□□□□ 10.9
YBX3P16989 STAU2-222ENST00000522962 1041 ntTSL 38.15□□□□□ -1.12e-6■□□□□ 10.9
YBX3P16989 STAU2-216ENST00000521736 550 ntTSL 57.95□□□□□ -1.142e-6■□□□□ 10.9
YBX3P16989 STAU2-213ENST00000521447 727 ntTSL 57.18□□□□□ -1.262e-6■□□□□ 10.9
YBX3P16989 STAU2-227ENST00000524113 658 ntTSL 26.67□□□□□ -1.342e-6■□□□□ 10.9
YBX3P16989 STAU2-217ENST00000521845 546 ntTSL 55.35□□□□□ -1.552e-6■□□□□ 10.9
YBX3P16989 STAU2-211ENST00000521293 552 ntTSL 45.03□□□□□ -1.62e-6■□□□□ 10.9
YBX3P16989 STAU2-209ENST00000520945 472 ntTSL 44.09□□□□□ -1.752e-6■□□□□ 10.9
YBX3P16989 CD63-205ENST00000548117 499 ntTSL 215.04■□□□□ -03e-18■□□□□ 10.9
YBX3P16989 MRPS2-204ENST00000462948 551 ntTSL 224.4■■□□□ 1.58e-8■□□□□ 10.9
YBX3P16989 IARS2-203ENST00000488777 570 ntTSL 29.48□□□□□ -0.891e-6■□□□□ 10.9
YBX3P16989 AP2M1-212ENST00000461733 1470 ntTSL 219.57■□□□□ 0.725e-7■□□□□ 10.9
YBX3P16989 UBE2V1-207ENST00000420027 1956 ntTSL 5 BASIC14.61□□□□□ -0.079e-8■□□□□ 10.9
YBX3P16989 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.785e-11■□□□□ 10.9
YBX3P16989 SET-204ENST00000372692 2850 ntTSL 1 (best) BASIC10.72□□□□□ -0.695e-11■□□□□ 10.9
YBX3P16989 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC18.59■□□□□ 0.575e-9■□□□□ 10.9
YBX3P16989 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.455e-9■□□□□ 10.9
YBX3P16989 ACTR3-201ENST00000263238 6718 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.271e-8■□□□□ 10.9
YBX3P16989 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC21.29■■□□□ 12e-6■□□□□ 10.9
YBX3P16989 EEF1E1-203ENST00000488226 443 ntTSL 29.08□□□□□ -0.962e-6■□□□□ 10.9
YBX3P16989 QARS-231ENST00000634602 544 ntTSL 419.09■□□□□ 0.651e-8■□□□□ 10.9
YBX3P16989 QARS-237ENST00000635194 582 ntTSL 517.91■□□□□ 0.461e-8■□□□□ 10.9
YBX3P16989 QARS-232ENST00000634609 553 ntTSL 1 (best)17.33■□□□□ 0.361e-8■□□□□ 10.9
YBX3P16989 QARS-235ENST00000634953 583 ntTSL 417.15■□□□□ 0.341e-8■□□□□ 10.9
YBX3P16989 QARS-239ENST00000635278 597 ntTSL 216.95■□□□□ 0.31e-8■□□□□ 10.9
YBX3P16989 QARS-233ENST00000634724 754 ntTSL 215.97■□□□□ 0.151e-8■□□□□ 10.9
YBX3P16989 QARS-204ENST00000418549 558 ntTSL 415.89■□□□□ 0.131e-8■□□□□ 10.9
YBX3P16989 QARS-243ENST00000635494 568 ntTSL 414.93□□□□□ -0.021e-8■□□□□ 10.9
YBX3P16989 QARS-238ENST00000635231 578 ntTSL 414.44□□□□□ -0.11e-8■□□□□ 10.9
YBX3P16989 QARS-246ENST00000635622 701 ntTSL 314.1□□□□□ -0.151e-8■□□□□ 10.9
YBX3P16989 QARS-236ENST00000635052 570 ntTSL 513.87□□□□□ -0.191e-8■□□□□ 10.9
YBX3P16989 QARS-203ENST00000417025 572 ntTSL 513.09□□□□□ -0.311e-8■□□□□ 10.9
YBX3P16989 QARS-215ENST00000479495 577 ntTSL 413.05□□□□□ -0.321e-8■□□□□ 10.9
YBX3P16989 QARS-226ENST00000634359 437 ntTSL 511.6□□□□□ -0.551e-8■□□□□ 10.9
YBX3P16989 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.44e-10■□□□□ 10.9
YBX3P16989 PBX2-202ENST00000478678 1320 ntTSL 1 (best)29.82■■■□□ 2.369e-7■□□□□ 10.9
YBX3P16989 PBX2-205ENST00000496171 1050 ntTSL 221.3■■□□□ 19e-7■□□□□ 10.9
YBX3P16989 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.49e-7■□□□□ 10.9
YBX3P16989 RPP21-229ENST00000498414 1492 ntTSL 530.79■■■□□ 2.526e-7■□□□□ 10.9
YBX3P16989 RPP21-222ENST00000433076 577 ntTSL 2 BASIC30.69■■■□□ 2.56e-7■□□□□ 10.9
YBX3P16989 RPP21-226ENST00000473266 621 ntTSL 528.38■■■□□ 2.136e-7■□□□□ 10.9
YBX3P16989 RPP21-221ENST00000428040 594 ntTSL 2 BASIC24.17■■□□□ 1.466e-7■□□□□ 10.9
YBX3P16989 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.466e-7■□□□□ 10.9
YBX3P16989 RPP21-228ENST00000491477 457 ntTSL 524.17■■□□□ 1.466e-7■□□□□ 10.9
YBX3P16989 TRIM39-RPP21-201ENST00000623385 1698 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.186e-7■□□□□ 10.9
YBX3P16989 RPP21-223ENST00000436442 522 ntTSL 1 (best) BASIC14.53□□□□□ -0.086e-7■□□□□ 10.9
YBX3P16989 RPP21-227ENST00000489124 450 ntTSL 310.78□□□□□ -0.686e-7■□□□□ 10.9
YBX3P16989 XPO1-203ENST00000406957 3479 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.829e-10■□□□□ 10.9
YBX3P16989 XPO1-202ENST00000404992 4105 ntAPPRIS P1 TSL 2 BASIC8.05□□□□□ -1.129e-10■□□□□ 10.9
YBX3P16989 PI4KA-203ENST00000449120 574 ntTSL 422.7■■□□□ 1.229e-11■□□□□ 10.9
YBX3P16989 TCP1-206ENST00000536607 572 ntTSL 225.14■■□□□ 1.623e-12■□□□□ 10.9
YBX3P16989 FADS1-213ENST00000539999 405 ntTSL 38.14□□□□□ -1.115e-14■□□□□ 10.9
YBX3P16989 SERBP1-208ENST00000493607 615 ntTSL 230.8■■■□□ 2.526e-6■□□□□ 10.9
YBX3P16989 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC30.46■■■□□ 2.476e-6■□□□□ 10.9
YBX3P16989 PDE4A-205ENST00000586275 695 ntTSL 328.38■■■□□ 2.136e-6■□□□□ 10.9
YBX3P16989 RUVBL2-209ENST00000596837 682 ntTSL 227.72■■■□□ 2.036e-6■□□□□ 10.9
YBX3P16989 SEMA7A-204ENST00000567345 674 ntTSL 427.47■■□□□ 1.996e-6■□□□□ 10.9
YBX3P16989 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.886e-6■□□□□ 10.9
YBX3P16989 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC26.8■■□□□ 1.886e-6■□□□□ 10.9
YBX3P16989 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC26.61■■□□□ 1.856e-6■□□□□ 10.9
YBX3P16989 RUVBL2-202ENST00000593570 813 ntTSL 526.6■■□□□ 1.856e-6■□□□□ 10.9
YBX3P16989 NFS1-212ENST00000489163 602 ntTSL 326.46■■□□□ 1.836e-6■□□□□ 10.9
YBX3P16989 PIGS-212ENST00000582721 594 ntTSL 426.3■■□□□ 1.85e-6■□□□□ 10.9
YBX3P16989 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC24.43■■□□□ 1.56e-6■□□□□ 10.9
YBX3P16989 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.376e-6■□□□□ 10.9
YBX3P16989 PDE4A-206ENST00000589073 1703 ntTSL 523.39■■□□□ 1.336e-6■□□□□ 10.9
YBX3P16989 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC23.28■■□□□ 1.326e-6■□□□□ 10.9
YBX3P16989 FAM98C-207ENST00000589027 670 ntTSL 222.33■■□□□ 1.176e-6■□□□□ 10.9
YBX3P16989 PML-213ENST00000565239 783 ntTSL 322.16■■□□□ 1.146e-6■□□□□ 10.9
YBX3P16989 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC21.93■■□□□ 1.16e-6■□□□□ 10.9
YBX3P16989 VRK2-205ENST00000432057 1870 ntTSL 1 (best)21.65■■□□□ 1.066e-6■□□□□ 10.9
YBX3P16989 FAM98C-206ENST00000588348 2530 ntTSL 221.55■■□□□ 1.046e-6■□□□□ 10.9
YBX3P16989 PML-218ENST00000567606 2042 ntTSL 1 (best)21.31■■□□□ 16e-6■□□□□ 10.9
YBX3P16989 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC21.2■□□□□ 0.986e-6■□□□□ 10.9
YBX3P16989 NUPL2-207ENST00000485250 2010 ntTSL 520.91■□□□□ 0.946e-6■□□□□ 10.9
YBX3P16989 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.926e-6■□□□□ 10.9
YBX3P16989 FAM189B-206ENST00000481822 2103 ntTSL 220.57■□□□□ 0.886e-6■□□□□ 10.9
YBX3P16989 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.796e-6■□□□□ 10.9
YBX3P16989 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC19.93■□□□□ 0.786e-6■□□□□ 10.9
YBX3P16989 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.655e-6■□□□□ 10.9
YBX3P16989 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC18.67■□□□□ 0.586e-6■□□□□ 10.9
YBX3P16989 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC18.29■□□□□ 0.526e-6■□□□□ 10.9
YBX3P16989 NUPL2-211ENST00000497500 739 ntTSL 218.29■□□□□ 0.526e-6■□□□□ 10.9
YBX3P16989 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.516e-6■□□□□ 10.9
YBX3P16989 NUPL2-203ENST00000413919 1329 ntTSL 318.23■□□□□ 0.516e-6■□□□□ 10.9
YBX3P16989 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.425e-6■□□□□ 10.9
Retrieved 100 of 29,075 protein–RNA pairs in 144 ms