Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 HOTTIP_1.1-201ENST00000620415 57 ntBASIC19.19■□□□□ 0.66
HMGB1P09429 AP001282.1-201ENST00000531301 1499 ntBASIC19.19■□□□□ 0.66
HMGB1P09429 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HMGB1P09429 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC19.19■□□□□ 0.66
HMGB1P09429 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC19.19■□□□□ 0.66
HMGB1P09429 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC19.19■□□□□ 0.66
HMGB1P09429 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HMGB1P09429 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC19.19■□□□□ 0.66
HMGB1P09429 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HMGB1P09429 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
HMGB1P09429 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC19.19■□□□□ 0.66
HMGB1P09429 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC19.18■□□□□ 0.66
HMGB1P09429 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC19.18■□□□□ 0.66
HMGB1P09429 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
HMGB1P09429 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
HMGB1P09429 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
HMGB1P09429 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
HMGB1P09429 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC19.18■□□□□ 0.66
HMGB1P09429 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
HMGB1P09429 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC19.18■□□□□ 0.66
HMGB1P09429 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC19.18■□□□□ 0.66
HMGB1P09429 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HMGB1P09429 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
HMGB1P09429 TIMM8BP1-201ENST00000452384 211 ntBASIC19.18■□□□□ 0.66
HMGB1P09429 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
HMGB1P09429 YBX1P5-201ENST00000509441 847 ntBASIC19.18■□□□□ 0.66
HMGB1P09429 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC19.18■□□□□ 0.66
HMGB1P09429 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
HMGB1P09429 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HMGB1P09429 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC19.18■□□□□ 0.66
HMGB1P09429 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
HMGB1P09429 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HMGB1P09429 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC19.18■□□□□ 0.66
HMGB1P09429 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HMGB1P09429 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC19.18■□□□□ 0.66
HMGB1P09429 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HMGB1P09429 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC19.18■□□□□ 0.66
HMGB1P09429 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
HMGB1P09429 AC011477.6-201ENST00000604980 1927 ntBASIC19.17■□□□□ 0.66
HMGB1P09429 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
HMGB1P09429 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC19.17■□□□□ 0.66
HMGB1P09429 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC19.17■□□□□ 0.66
HMGB1P09429 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
HMGB1P09429 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGB1P09429 AGK-211ENST00000629555 2765 ntTSL 5 BASIC19.17■□□□□ 0.66
HMGB1P09429 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC19.17■□□□□ 0.66
HMGB1P09429 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC19.17■□□□□ 0.66
HMGB1P09429 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
HMGB1P09429 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC19.17■□□□□ 0.66
HMGB1P09429 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGB1P09429 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
HMGB1P09429 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGB1P09429 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC19.17■□□□□ 0.66
HMGB1P09429 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HMGB1P09429 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC19.17■□□□□ 0.66
HMGB1P09429 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HMGB1P09429 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC19.17■□□□□ 0.66
HMGB1P09429 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC19.17■□□□□ 0.66
HMGB1P09429 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGB1P09429 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC19.17■□□□□ 0.66
HMGB1P09429 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HMGB1P09429 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGB1P09429 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC19.17■□□□□ 0.66
HMGB1P09429 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGB1P09429 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGB1P09429 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HMGB1P09429 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
HMGB1P09429 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGB1P09429 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGB1P09429 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HMGB1P09429 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGB1P09429 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGB1P09429 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGB1P09429 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC19.17■□□□□ 0.66
HMGB1P09429 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC19.16■□□□□ 0.66
HMGB1P09429 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC19.16■□□□□ 0.66
HMGB1P09429 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC19.16■□□□□ 0.66
HMGB1P09429 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGB1P09429 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGB1P09429 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC19.16■□□□□ 0.66
HMGB1P09429 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGB1P09429 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGB1P09429 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGB1P09429 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGB1P09429 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC19.16■□□□□ 0.66
HMGB1P09429 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGB1P09429 CD82-202ENST00000342935 967 ntTSL 5 BASIC19.16■□□□□ 0.66
HMGB1P09429 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC19.16■□□□□ 0.66
HMGB1P09429 CEND1P1-201ENST00000451006 455 ntBASIC19.16■□□□□ 0.66
HMGB1P09429 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC19.16■□□□□ 0.66
HMGB1P09429 PUS1-205ENST00000535067 838 ntTSL 3 BASIC19.16■□□□□ 0.66
HMGB1P09429 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC19.16■□□□□ 0.66
HMGB1P09429 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC19.16■□□□□ 0.66
HMGB1P09429 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGB1P09429 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
HMGB1P09429 AC105339.1-204ENST00000636249 355 ntBASIC19.16■□□□□ 0.66
HMGB1P09429 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGB1P09429 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC19.16■□□□□ 0.66
HMGB1P09429 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC19.16■□□□□ 0.66
HMGB1P09429 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms