Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LDLRP01130 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LDLRP01130 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LDLRP01130 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LDLRP01130 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
LDLRP01130 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC15.82■□□□□ 0.12
LDLRP01130 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
LDLRP01130 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC15.82■□□□□ 0.12
LDLRP01130 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LDLRP01130 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
LDLRP01130 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC15.82■□□□□ 0.12
LDLRP01130 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LDLRP01130 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
LDLRP01130 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC15.82■□□□□ 0.12
LDLRP01130 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
LDLRP01130 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC15.82■□□□□ 0.12
LDLRP01130 WBP2-203ENST00000433525 928 ntTSL 2 BASIC15.82■□□□□ 0.12
LDLRP01130 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC15.82■□□□□ 0.12
LDLRP01130 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC15.82■□□□□ 0.12
LDLRP01130 AC136632.2-201ENST00000512891 861 ntBASIC15.82■□□□□ 0.12
LDLRP01130 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LDLRP01130 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC15.82■□□□□ 0.12
LDLRP01130 TCAP-202ENST00000578283 583 ntTSL 5 BASIC15.82■□□□□ 0.12
LDLRP01130 SDCCAG3P1-201ENST00000589292 1150 ntBASIC15.82■□□□□ 0.12
LDLRP01130 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC15.82■□□□□ 0.12
LDLRP01130 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC15.82■□□□□ 0.12
LDLRP01130 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
LDLRP01130 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LDLRP01130 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LDLRP01130 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LDLRP01130 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LDLRP01130 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LDLRP01130 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC15.82■□□□□ 0.12
LDLRP01130 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
LDLRP01130 AC079776.2-201ENST00000641154 1609 ntBASIC15.82■□□□□ 0.12
LDLRP01130 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC15.82■□□□□ 0.12
LDLRP01130 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC15.82■□□□□ 0.12
LDLRP01130 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LDLRP01130 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC15.82■□□□□ 0.12
LDLRP01130 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LDLRP01130 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
LDLRP01130 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC15.82■□□□□ 0.12
LDLRP01130 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LDLRP01130 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC15.82■□□□□ 0.12
LDLRP01130 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LDLRP01130 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LDLRP01130 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LDLRP01130 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC15.82■□□□□ 0.12
LDLRP01130 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LDLRP01130 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
LDLRP01130 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LDLRP01130 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
LDLRP01130 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC15.82■□□□□ 0.12
LDLRP01130 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LDLRP01130 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
LDLRP01130 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LDLRP01130 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LDLRP01130 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC15.81■□□□□ 0.12
LDLRP01130 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC15.81■□□□□ 0.12
LDLRP01130 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC15.81■□□□□ 0.12
LDLRP01130 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
LDLRP01130 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LDLRP01130 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LDLRP01130 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LDLRP01130 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LDLRP01130 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
LDLRP01130 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LDLRP01130 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
LDLRP01130 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LDLRP01130 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC15.81■□□□□ 0.12
LDLRP01130 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
LDLRP01130 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
LDLRP01130 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
LDLRP01130 METTL26-205ENST00000397666 726 ntTSL 2 BASIC15.81■□□□□ 0.12
LDLRP01130 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC15.81■□□□□ 0.12
LDLRP01130 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC15.81■□□□□ 0.12
LDLRP01130 MKNK2P1-201ENST00000437526 628 ntBASIC15.81■□□□□ 0.12
LDLRP01130 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC15.81■□□□□ 0.12
LDLRP01130 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC15.81■□□□□ 0.12
LDLRP01130 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LDLRP01130 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LDLRP01130 STK19B-204ENST00000512515 211 ntBASIC15.81■□□□□ 0.12
LDLRP01130 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LDLRP01130 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC15.81■□□□□ 0.12
LDLRP01130 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC15.81■□□□□ 0.12
LDLRP01130 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC15.81■□□□□ 0.12
LDLRP01130 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
LDLRP01130 AMT-233ENST00000636522 1620 ntTSL 2 BASIC15.81■□□□□ 0.12
LDLRP01130 AC092865.6-201ENST00000642101 219 ntBASIC15.81■□□□□ 0.12
LDLRP01130 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LDLRP01130 ING5-213ENST00000636051 4199 ntTSL 5 BASIC15.81■□□□□ 0.12
LDLRP01130 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LDLRP01130 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
LDLRP01130 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LDLRP01130 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LDLRP01130 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
LDLRP01130 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
LDLRP01130 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LDLRP01130 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
LDLRP01130 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms