Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
ABCA1O95477 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
ABCA1O95477 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
ABCA1O95477 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
ABCA1O95477 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
ABCA1O95477 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC13.68□□□□□ -0.22
ABCA1O95477 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
ABCA1O95477 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC13.68□□□□□ -0.22
ABCA1O95477 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
ABCA1O95477 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
ABCA1O95477 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
ABCA1O95477 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
ABCA1O95477 HLA-H-201ENST00000383620 1096 ntBASIC13.68□□□□□ -0.22
ABCA1O95477 AC007389.4-201ENST00000454674 793 ntBASIC13.68□□□□□ -0.22
ABCA1O95477 POLE2-203ENST00000553805 496 ntTSL 2 BASIC13.68□□□□□ -0.22
ABCA1O95477 AC140912.1-201ENST00000577171 1054 ntBASIC13.68□□□□□ -0.22
ABCA1O95477 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
ABCA1O95477 AL844908.2-201ENST00000609461 460 ntBASIC13.68□□□□□ -0.22
ABCA1O95477 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
ABCA1O95477 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC13.68□□□□□ -0.22
ABCA1O95477 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
ABCA1O95477 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
ABCA1O95477 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC13.68□□□□□ -0.22
ABCA1O95477 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC13.68□□□□□ -0.22
ABCA1O95477 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
ABCA1O95477 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
ABCA1O95477 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
ABCA1O95477 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC13.68□□□□□ -0.22
ABCA1O95477 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
ABCA1O95477 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
ABCA1O95477 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC13.68□□□□□ -0.22
ABCA1O95477 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC13.68□□□□□ -0.22
ABCA1O95477 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC13.67□□□□□ -0.22
ABCA1O95477 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
ABCA1O95477 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
ABCA1O95477 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
ABCA1O95477 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC13.67□□□□□ -0.22
ABCA1O95477 BANF1P1-201ENST00000553684 263 ntBASIC13.67□□□□□ -0.22
ABCA1O95477 RAB43P1-201ENST00000561790 589 ntBASIC13.67□□□□□ -0.22
ABCA1O95477 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC13.67□□□□□ -0.22
ABCA1O95477 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
ABCA1O95477 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC13.67□□□□□ -0.22
ABCA1O95477 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
ABCA1O95477 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
ABCA1O95477 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
ABCA1O95477 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
ABCA1O95477 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
ABCA1O95477 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC13.67□□□□□ -0.22
ABCA1O95477 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
ABCA1O95477 AD000864.1-201ENST00000624076 2295 ntBASIC13.67□□□□□ -0.22
ABCA1O95477 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
ABCA1O95477 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
ABCA1O95477 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
ABCA1O95477 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
ABCA1O95477 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
ABCA1O95477 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
ABCA1O95477 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC13.67□□□□□ -0.22
ABCA1O95477 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
ABCA1O95477 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
ABCA1O95477 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
ABCA1O95477 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
ABCA1O95477 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC13.67□□□□□ -0.22
ABCA1O95477 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
ABCA1O95477 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC13.67□□□□□ -0.22
ABCA1O95477 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
ABCA1O95477 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC13.67□□□□□ -0.22
ABCA1O95477 STARD13-205ENST00000439831 945 ntTSL 2 BASIC13.67□□□□□ -0.22
ABCA1O95477 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC13.67□□□□□ -0.22
ABCA1O95477 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC13.67□□□□□ -0.22
ABCA1O95477 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
ABCA1O95477 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC13.67□□□□□ -0.22
ABCA1O95477 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
ABCA1O95477 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
ABCA1O95477 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
ABCA1O95477 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
ABCA1O95477 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
ABCA1O95477 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
ABCA1O95477 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
ABCA1O95477 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
ABCA1O95477 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
ABCA1O95477 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC13.66□□□□□ -0.22
ABCA1O95477 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC13.66□□□□□ -0.22
ABCA1O95477 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
ABCA1O95477 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
ABCA1O95477 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC13.66□□□□□ -0.22
ABCA1O95477 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
ABCA1O95477 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
ABCA1O95477 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
ABCA1O95477 SLC25A1P3-201ENST00000395415 828 ntBASIC13.66□□□□□ -0.22
ABCA1O95477 INE1-201ENST00000456273 945 ntBASIC13.66□□□□□ -0.22
ABCA1O95477 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC13.66□□□□□ -0.22
ABCA1O95477 RARRES2P9-201ENST00000565168 469 ntBASIC13.66□□□□□ -0.22
ABCA1O95477 ARL16-202ENST00000570561 768 ntTSL 2 BASIC13.66□□□□□ -0.22
ABCA1O95477 AL606495.2-201ENST00000605867 535 ntBASIC13.66□□□□□ -0.22
ABCA1O95477 Six3os1_5.1-201ENST00000611000 271 ntBASIC13.66□□□□□ -0.22
ABCA1O95477 AL162274.1-201ENST00000617191 1098 ntBASIC13.66□□□□□ -0.22
ABCA1O95477 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
ABCA1O95477 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
ABCA1O95477 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC13.66□□□□□ -0.22
ABCA1O95477 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 72 ms