Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TM9SF3Q9HD45 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
TM9SF3Q9HD45 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TM9SF3Q9HD45 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC16.3■□□□□ 0.2
TM9SF3Q9HD45 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TM9SF3Q9HD45 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
TM9SF3Q9HD45 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TM9SF3Q9HD45 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC16.29■□□□□ 0.2
TM9SF3Q9HD45 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TM9SF3Q9HD45 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TM9SF3Q9HD45 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TM9SF3Q9HD45 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TM9SF3Q9HD45 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TM9SF3Q9HD45 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TM9SF3Q9HD45 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TM9SF3Q9HD45 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TM9SF3Q9HD45 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
TM9SF3Q9HD45 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TM9SF3Q9HD45 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC16.29■□□□□ 0.2
TM9SF3Q9HD45 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC16.29■□□□□ 0.2
TM9SF3Q9HD45 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TM9SF3Q9HD45 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TM9SF3Q9HD45 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TM9SF3Q9HD45 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC16.29■□□□□ 0.2
TM9SF3Q9HD45 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC16.29■□□□□ 0.2
TM9SF3Q9HD45 DPM2-202ENST00000373110 738 ntTSL 2 BASIC16.29■□□□□ 0.2
TM9SF3Q9HD45 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC16.29■□□□□ 0.2
TM9SF3Q9HD45 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC16.29■□□□□ 0.2
TM9SF3Q9HD45 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC16.29■□□□□ 0.2
TM9SF3Q9HD45 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC16.29■□□□□ 0.2
TM9SF3Q9HD45 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC16.29■□□□□ 0.2
TM9SF3Q9HD45 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC16.29■□□□□ 0.2
TM9SF3Q9HD45 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC16.29■□□□□ 0.2
TM9SF3Q9HD45 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC16.29■□□□□ 0.2
TM9SF3Q9HD45 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TM9SF3Q9HD45 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC16.29■□□□□ 0.2
TM9SF3Q9HD45 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC16.29■□□□□ 0.2
TM9SF3Q9HD45 BANF1P1-201ENST00000553684 263 ntBASIC16.29■□□□□ 0.2
TM9SF3Q9HD45 SSH2-210ENST00000582084 560 ntTSL 3 BASIC16.29■□□□□ 0.2
TM9SF3Q9HD45 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC16.29■□□□□ 0.2
TM9SF3Q9HD45 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC16.29■□□□□ 0.2
TM9SF3Q9HD45 AL844908.2-201ENST00000609461 460 ntBASIC16.29■□□□□ 0.2
TM9SF3Q9HD45 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TM9SF3Q9HD45 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TM9SF3Q9HD45 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
TM9SF3Q9HD45 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC16.29■□□□□ 0.2
TM9SF3Q9HD45 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TM9SF3Q9HD45 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC16.29■□□□□ 0.2
TM9SF3Q9HD45 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
TM9SF3Q9HD45 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TM9SF3Q9HD45 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC16.28■□□□□ 0.2
TM9SF3Q9HD45 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TM9SF3Q9HD45 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TM9SF3Q9HD45 PCDH8P1-201ENST00000428983 2773 ntBASIC16.28■□□□□ 0.2
TM9SF3Q9HD45 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC16.28■□□□□ 0.2
TM9SF3Q9HD45 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
TM9SF3Q9HD45 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
TM9SF3Q9HD45 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
TM9SF3Q9HD45 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC16.28■□□□□ 0.2
TM9SF3Q9HD45 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC16.28■□□□□ 0.2
TM9SF3Q9HD45 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC16.28■□□□□ 0.2
TM9SF3Q9HD45 COX5BP8-201ENST00000416911 349 ntBASIC16.28■□□□□ 0.2
TM9SF3Q9HD45 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC16.28■□□□□ 0.2
TM9SF3Q9HD45 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC16.28■□□□□ 0.2
TM9SF3Q9HD45 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC16.28■□□□□ 0.2
TM9SF3Q9HD45 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
TM9SF3Q9HD45 CDK4-206ENST00000549606 558 ntTSL 2 BASIC16.28■□□□□ 0.2
TM9SF3Q9HD45 PRR29-204ENST00000577953 565 ntTSL 4 BASIC16.28■□□□□ 0.2
TM9SF3Q9HD45 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC16.28■□□□□ 0.2
TM9SF3Q9HD45 SRP9-204ENST00000619790 377 ntTSL 2 BASIC16.28■□□□□ 0.2
TM9SF3Q9HD45 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TM9SF3Q9HD45 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TM9SF3Q9HD45 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
TM9SF3Q9HD45 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
TM9SF3Q9HD45 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TM9SF3Q9HD45 AC008894.3-201ENST00000624324 3103 ntBASIC16.28■□□□□ 0.2
TM9SF3Q9HD45 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC16.28■□□□□ 0.2
TM9SF3Q9HD45 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC16.28■□□□□ 0.2
TM9SF3Q9HD45 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TM9SF3Q9HD45 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TM9SF3Q9HD45 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC16.28■□□□□ 0.2
TM9SF3Q9HD45 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TM9SF3Q9HD45 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TM9SF3Q9HD45 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC16.28■□□□□ 0.2
TM9SF3Q9HD45 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
TM9SF3Q9HD45 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TM9SF3Q9HD45 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TM9SF3Q9HD45 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TM9SF3Q9HD45 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC16.28■□□□□ 0.2
TM9SF3Q9HD45 KRT8P39-201ENST00000396270 1433 ntBASIC16.28■□□□□ 0.2
TM9SF3Q9HD45 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC16.28■□□□□ 0.2
TM9SF3Q9HD45 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC16.28■□□□□ 0.2
TM9SF3Q9HD45 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC16.27■□□□□ 0.2
TM9SF3Q9HD45 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
TM9SF3Q9HD45 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC16.27■□□□□ 0.2
TM9SF3Q9HD45 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TM9SF3Q9HD45 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC16.27■□□□□ 0.2
TM9SF3Q9HD45 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
TM9SF3Q9HD45 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TM9SF3Q9HD45 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 60 ms