Protein–RNA interactions for Protein: Q9H347

UBQLN3, Ubiquilin-3, humanhuman

Predictions only

Length 655 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN3Q9H347 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
UBQLN3Q9H347 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
UBQLN3Q9H347 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC15.14■□□□□ 0.01
UBQLN3Q9H347 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
UBQLN3Q9H347 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
UBQLN3Q9H347 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
UBQLN3Q9H347 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
UBQLN3Q9H347 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
UBQLN3Q9H347 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 GGCT-205ENST00000409436 954 ntTSL 3 BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 WDR53-204ENST00000433160 887 ntTSL 5 BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 AC079140.1-201ENST00000508039 487 ntBASIC15.13■□□□□ 0.01
UBQLN3Q9H347 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
UBQLN3Q9H347 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
UBQLN3Q9H347 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
UBQLN3Q9H347 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC15.12■□□□□ 0.01
UBQLN3Q9H347 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
UBQLN3Q9H347 GOLGA6L17P-202ENST00000614358 1398 ntBASIC15.12■□□□□ 0.01
UBQLN3Q9H347 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
UBQLN3Q9H347 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
UBQLN3Q9H347 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC15.12■□□□□ 0.01
UBQLN3Q9H347 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC15.12■□□□□ 0.01
UBQLN3Q9H347 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
UBQLN3Q9H347 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
UBQLN3Q9H347 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC15.12■□□□□ 0.01
UBQLN3Q9H347 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC15.12■□□□□ 0.01
UBQLN3Q9H347 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
UBQLN3Q9H347 AL031731.1-201ENST00000642131 2094 ntBASIC15.12■□□□□ 0.01
UBQLN3Q9H347 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
UBQLN3Q9H347 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
UBQLN3Q9H347 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
UBQLN3Q9H347 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC15.12■□□□□ 0.01
UBQLN3Q9H347 KRT8P39-201ENST00000396270 1433 ntBASIC15.12■□□□□ 0.01
UBQLN3Q9H347 AC024909.3-201ENST00000611513 2257 ntBASIC15.12■□□□□ 0.01
UBQLN3Q9H347 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC15.12■□□□□ 0.01
UBQLN3Q9H347 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
UBQLN3Q9H347 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC15.12■□□□□ 0.01
UBQLN3Q9H347 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC15.12■□□□□ 0.01
UBQLN3Q9H347 LBH-203ENST00000404397 543 ntTSL 4 BASIC15.12■□□□□ 0.01
UBQLN3Q9H347 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC15.12■□□□□ 0.01
UBQLN3Q9H347 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC15.12■□□□□ 0.01
UBQLN3Q9H347 AC093520.2-201ENST00000561830 333 ntBASIC15.12■□□□□ 0.01
UBQLN3Q9H347 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC15.12■□□□□ 0.01
UBQLN3Q9H347 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC15.12■□□□□ 0.01
UBQLN3Q9H347 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
UBQLN3Q9H347 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
UBQLN3Q9H347 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC15.12■□□□□ 0.01
UBQLN3Q9H347 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms