Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
CHMP4AQ9BY43 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
CHMP4AQ9BY43 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CHMP4AQ9BY43 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CHMP4AQ9BY43 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
CHMP4AQ9BY43 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CHMP4AQ9BY43 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CHMP4AQ9BY43 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CHMP4AQ9BY43 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CHMP4AQ9BY43 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CHMP4AQ9BY43 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC20.7■□□□□ 0.9
CHMP4AQ9BY43 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP4AQ9BY43 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC20.69■□□□□ 0.9
CHMP4AQ9BY43 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP4AQ9BY43 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP4AQ9BY43 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC20.69■□□□□ 0.9
CHMP4AQ9BY43 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC20.69■□□□□ 0.9
CHMP4AQ9BY43 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP4AQ9BY43 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC20.69■□□□□ 0.9
CHMP4AQ9BY43 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC20.69■□□□□ 0.9
CHMP4AQ9BY43 NKILA-202ENST00000614771 2598 ntBASIC20.69■□□□□ 0.9
CHMP4AQ9BY43 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP4AQ9BY43 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC20.69■□□□□ 0.9
CHMP4AQ9BY43 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP4AQ9BY43 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP4AQ9BY43 HAUS4P1-201ENST00000406739 1145 ntBASIC20.69■□□□□ 0.9
CHMP4AQ9BY43 TSSK5P-201ENST00000423978 907 ntBASIC20.69■□□□□ 0.9
CHMP4AQ9BY43 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC20.69■□□□□ 0.9
CHMP4AQ9BY43 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC20.69■□□□□ 0.9
CHMP4AQ9BY43 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC20.69■□□□□ 0.9
CHMP4AQ9BY43 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC20.69■□□□□ 0.9
CHMP4AQ9BY43 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
CHMP4AQ9BY43 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC20.69■□□□□ 0.9
CHMP4AQ9BY43 NAA60-208ENST00000570819 833 ntTSL 2 BASIC20.69■□□□□ 0.9
CHMP4AQ9BY43 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP4AQ9BY43 SSH2-210ENST00000582084 560 ntTSL 3 BASIC20.69■□□□□ 0.9
CHMP4AQ9BY43 MIR3197-201ENST00000582241 73 ntBASIC20.69■□□□□ 0.9
CHMP4AQ9BY43 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC20.69■□□□□ 0.9
CHMP4AQ9BY43 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP4AQ9BY43 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
CHMP4AQ9BY43 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP4AQ9BY43 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC20.69■□□□□ 0.9
CHMP4AQ9BY43 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP4AQ9BY43 AC006449.6-201ENST00000612330 2296 ntBASIC20.69■□□□□ 0.9
CHMP4AQ9BY43 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP4AQ9BY43 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP4AQ9BY43 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC20.69■□□□□ 0.9
CHMP4AQ9BY43 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP4AQ9BY43 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP4AQ9BY43 ALOX12P2-203ENST00000570921 1945 ntBASIC20.68■□□□□ 0.9
CHMP4AQ9BY43 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC20.68■□□□□ 0.9
CHMP4AQ9BY43 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP4AQ9BY43 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP4AQ9BY43 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP4AQ9BY43 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
CHMP4AQ9BY43 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP4AQ9BY43 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP4AQ9BY43 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP4AQ9BY43 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP4AQ9BY43 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
CHMP4AQ9BY43 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC20.68■□□□□ 0.9
CHMP4AQ9BY43 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP4AQ9BY43 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC20.68■□□□□ 0.9
CHMP4AQ9BY43 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC20.68■□□□□ 0.9
CHMP4AQ9BY43 FXR1-221ENST00000491674 365 ntTSL 2 BASIC20.68■□□□□ 0.9
CHMP4AQ9BY43 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC20.68■□□□□ 0.9
CHMP4AQ9BY43 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC20.68■□□□□ 0.9
CHMP4AQ9BY43 SUOX-214ENST00000551841 906 ntTSL 3 BASIC20.68■□□□□ 0.9
CHMP4AQ9BY43 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC20.68■□□□□ 0.9
CHMP4AQ9BY43 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP4AQ9BY43 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP4AQ9BY43 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC20.68■□□□□ 0.9
CHMP4AQ9BY43 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC20.68■□□□□ 0.9
CHMP4AQ9BY43 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC20.68■□□□□ 0.9
CHMP4AQ9BY43 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP4AQ9BY43 CYP4F24P-201ENST00000586049 1580 ntBASIC20.68■□□□□ 0.9
CHMP4AQ9BY43 AC022144.1-201ENST00000602255 1580 ntBASIC20.68■□□□□ 0.9
CHMP4AQ9BY43 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
CHMP4AQ9BY43 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
CHMP4AQ9BY43 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP4AQ9BY43 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP4AQ9BY43 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP4AQ9BY43 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC20.67■□□□□ 0.9
CHMP4AQ9BY43 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP4AQ9BY43 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP4AQ9BY43 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP4AQ9BY43 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC20.67■□□□□ 0.9
CHMP4AQ9BY43 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP4AQ9BY43 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP4AQ9BY43 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
CHMP4AQ9BY43 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC20.67■□□□□ 0.9
CHMP4AQ9BY43 AC099398.1-201ENST00000567919 2776 ntBASIC20.67■□□□□ 0.9
CHMP4AQ9BY43 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
CHMP4AQ9BY43 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP4AQ9BY43 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
CHMP4AQ9BY43 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
CHMP4AQ9BY43 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP4AQ9BY43 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
CHMP4AQ9BY43 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP4AQ9BY43 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms