Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 AL354892.2-201ENST00000413088 403 ntTSL 5 BASIC16.1■□□□□ 0.17
COL25A1Q9BXS0 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC16.1■□□□□ 0.17
COL25A1Q9BXS0 IZUMO1R-202ENST00000440961 805 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
COL25A1Q9BXS0 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL25A1Q9BXS0 AC026410.3-201ENST00000514280 936 ntBASIC16.1■□□□□ 0.17
COL25A1Q9BXS0 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC16.1■□□□□ 0.17
COL25A1Q9BXS0 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC16.1■□□□□ 0.17
COL25A1Q9BXS0 CSH2-206ENST00000560142 749 ntTSL 5 BASIC16.1■□□□□ 0.17
COL25A1Q9BXS0 AC084262.1-201ENST00000567818 751 ntBASIC16.1■□□□□ 0.17
COL25A1Q9BXS0 PAM16-215ENST00000577031 548 ntTSL 4 BASIC16.1■□□□□ 0.17
COL25A1Q9BXS0 AC023389.1-201ENST00000577846 576 ntTSL 4 BASIC16.1■□□□□ 0.17
COL25A1Q9BXS0 RPL17P45-201ENST00000586289 509 ntBASIC16.1■□□□□ 0.17
COL25A1Q9BXS0 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL25A1Q9BXS0 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
COL25A1Q9BXS0 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
COL25A1Q9BXS0 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
COL25A1Q9BXS0 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC16.1■□□□□ 0.17
COL25A1Q9BXS0 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL25A1Q9BXS0 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
COL25A1Q9BXS0 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL25A1Q9BXS0 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL25A1Q9BXS0 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC16.09■□□□□ 0.17
COL25A1Q9BXS0 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC16.09■□□□□ 0.17
COL25A1Q9BXS0 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
COL25A1Q9BXS0 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL25A1Q9BXS0 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC16.09■□□□□ 0.17
COL25A1Q9BXS0 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
COL25A1Q9BXS0 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC16.09■□□□□ 0.17
COL25A1Q9BXS0 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC16.09■□□□□ 0.17
COL25A1Q9BXS0 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC16.09■□□□□ 0.17
COL25A1Q9BXS0 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL25A1Q9BXS0 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL25A1Q9BXS0 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
COL25A1Q9BXS0 RAC2-202ENST00000401529 569 ntTSL 4 BASIC16.09■□□□□ 0.17
COL25A1Q9BXS0 BCAS2P2-201ENST00000425064 674 ntBASIC16.09■□□□□ 0.17
COL25A1Q9BXS0 KRT18P64-201ENST00000434946 1219 ntBASIC16.09■□□□□ 0.17
COL25A1Q9BXS0 TARDBPP1-201ENST00000442013 1203 ntBASIC16.09■□□□□ 0.17
COL25A1Q9BXS0 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC16.09■□□□□ 0.17
COL25A1Q9BXS0 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
COL25A1Q9BXS0 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC16.09■□□□□ 0.17
COL25A1Q9BXS0 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC16.09■□□□□ 0.17
COL25A1Q9BXS0 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC16.09■□□□□ 0.17
COL25A1Q9BXS0 AC015910.1-201ENST00000579400 975 ntBASIC16.09■□□□□ 0.17
COL25A1Q9BXS0 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC16.09■□□□□ 0.17
COL25A1Q9BXS0 AC073592.2-201ENST00000623062 780 ntBASIC16.09■□□□□ 0.17
COL25A1Q9BXS0 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC16.09■□□□□ 0.17
COL25A1Q9BXS0 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC16.09■□□□□ 0.17
COL25A1Q9BXS0 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC16.09■□□□□ 0.17
COL25A1Q9BXS0 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
COL25A1Q9BXS0 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL25A1Q9BXS0 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC16.09■□□□□ 0.17
COL25A1Q9BXS0 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
COL25A1Q9BXS0 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
COL25A1Q9BXS0 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL25A1Q9BXS0 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC16.09■□□□□ 0.17
COL25A1Q9BXS0 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL25A1Q9BXS0 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
COL25A1Q9BXS0 KRT18P55-202ENST00000578578 1546 ntBASIC16.09■□□□□ 0.17
COL25A1Q9BXS0 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
COL25A1Q9BXS0 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL25A1Q9BXS0 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC16.09■□□□□ 0.17
COL25A1Q9BXS0 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
COL25A1Q9BXS0 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC16.08■□□□□ 0.17
COL25A1Q9BXS0 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
COL25A1Q9BXS0 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC16.08■□□□□ 0.17
COL25A1Q9BXS0 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
COL25A1Q9BXS0 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
COL25A1Q9BXS0 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
COL25A1Q9BXS0 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
COL25A1Q9BXS0 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC16.08■□□□□ 0.16
COL25A1Q9BXS0 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC16.08■□□□□ 0.16
COL25A1Q9BXS0 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC16.08■□□□□ 0.16
COL25A1Q9BXS0 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL25A1Q9BXS0 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL25A1Q9BXS0 KRT17P4-201ENST00000429445 819 ntBASIC16.08■□□□□ 0.16
COL25A1Q9BXS0 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
COL25A1Q9BXS0 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC16.08■□□□□ 0.16
COL25A1Q9BXS0 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC16.08■□□□□ 0.16
COL25A1Q9BXS0 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
COL25A1Q9BXS0 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
COL25A1Q9BXS0 FRMD4A-208ENST00000493380 1149 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
COL25A1Q9BXS0 MARK2P5-201ENST00000507649 634 ntBASIC16.08■□□□□ 0.16
COL25A1Q9BXS0 C5orf63-203ENST00000509733 553 ntTSL 4 BASIC16.08■□□□□ 0.16
COL25A1Q9BXS0 AP003068.3-201ENST00000527789 175 ntTSL 2 BASIC16.08■□□□□ 0.16
COL25A1Q9BXS0 PRB3-202ENST00000538488 1283 ntAPPRIS P5 TSL 5 BASIC16.08■□□□□ 0.16
COL25A1Q9BXS0 APOPT1-215ENST00000556253 783 ntTSL 3 BASIC16.08■□□□□ 0.16
COL25A1Q9BXS0 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC16.08■□□□□ 0.16
COL25A1Q9BXS0 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC16.08■□□□□ 0.16
COL25A1Q9BXS0 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC16.08■□□□□ 0.16
COL25A1Q9BXS0 IRF3-215ENST00000596822 823 ntTSL 3 BASIC16.08■□□□□ 0.16
COL25A1Q9BXS0 AC007718.1-201ENST00000621078 280 ntBASIC16.08■□□□□ 0.16
COL25A1Q9BXS0 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
COL25A1Q9BXS0 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL25A1Q9BXS0 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
COL25A1Q9BXS0 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
COL25A1Q9BXS0 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
COL25A1Q9BXS0 GRN-214ENST00000589265 1632 ntTSL 5 BASIC16.08■□□□□ 0.16
COL25A1Q9BXS0 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL25A1Q9BXS0 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
COL25A1Q9BXS0 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms