Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 QPRT-203ENST00000562473 579 ntTSL 3 BASIC18.63■□□□□ 0.57
USP28Q96RU2 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
USP28Q96RU2 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC18.63■□□□□ 0.57
USP28Q96RU2 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
USP28Q96RU2 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC18.63■□□□□ 0.57
USP28Q96RU2 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
USP28Q96RU2 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
USP28Q96RU2 AL589702.1-201ENST00000641229 1509 ntBASIC18.63■□□□□ 0.57
USP28Q96RU2 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
USP28Q96RU2 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USP28Q96RU2 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USP28Q96RU2 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
USP28Q96RU2 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
USP28Q96RU2 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
USP28Q96RU2 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
USP28Q96RU2 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC18.62■□□□□ 0.57
USP28Q96RU2 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
USP28Q96RU2 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC18.62■□□□□ 0.57
USP28Q96RU2 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
USP28Q96RU2 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC18.62■□□□□ 0.57
USP28Q96RU2 DBET-201ENST00000630918 3363 ntBASIC18.62■□□□□ 0.57
USP28Q96RU2 HAUS4P1-201ENST00000406739 1145 ntBASIC18.62■□□□□ 0.57
USP28Q96RU2 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
USP28Q96RU2 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC18.62■□□□□ 0.57
USP28Q96RU2 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC18.62■□□□□ 0.57
USP28Q96RU2 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
USP28Q96RU2 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
USP28Q96RU2 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC18.62■□□□□ 0.57
USP28Q96RU2 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
USP28Q96RU2 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC18.62■□□□□ 0.57
USP28Q96RU2 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
USP28Q96RU2 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
USP28Q96RU2 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC18.62■□□□□ 0.57
USP28Q96RU2 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
USP28Q96RU2 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
USP28Q96RU2 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
USP28Q96RU2 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
USP28Q96RU2 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
USP28Q96RU2 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
USP28Q96RU2 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
USP28Q96RU2 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP28Q96RU2 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC18.61■□□□□ 0.57
USP28Q96RU2 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
USP28Q96RU2 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC18.61■□□□□ 0.57
USP28Q96RU2 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP28Q96RU2 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC18.61■□□□□ 0.57
USP28Q96RU2 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC18.61■□□□□ 0.57
USP28Q96RU2 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP28Q96RU2 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP28Q96RU2 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC18.61■□□□□ 0.57
USP28Q96RU2 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
USP28Q96RU2 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP28Q96RU2 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC18.61■□□□□ 0.57
USP28Q96RU2 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP28Q96RU2 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP28Q96RU2 LBH-204ENST00000406087 559 ntTSL 4 BASIC18.61■□□□□ 0.57
USP28Q96RU2 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC18.61■□□□□ 0.57
USP28Q96RU2 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC18.61■□□□□ 0.57
USP28Q96RU2 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC18.61■□□□□ 0.57
USP28Q96RU2 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC18.61■□□□□ 0.57
USP28Q96RU2 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC18.61■□□□□ 0.57
USP28Q96RU2 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC18.61■□□□□ 0.57
USP28Q96RU2 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
USP28Q96RU2 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
USP28Q96RU2 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP28Q96RU2 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
USP28Q96RU2 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
USP28Q96RU2 AC103702.1-201ENST00000548801 2630 ntBASIC18.61■□□□□ 0.57
USP28Q96RU2 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC18.61■□□□□ 0.57
USP28Q96RU2 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
USP28Q96RU2 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USP28Q96RU2 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC18.61■□□□□ 0.57
USP28Q96RU2 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC18.61■□□□□ 0.57
USP28Q96RU2 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
USP28Q96RU2 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC18.61■□□□□ 0.57
USP28Q96RU2 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC18.6■□□□□ 0.57
USP28Q96RU2 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC18.6■□□□□ 0.57
USP28Q96RU2 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
USP28Q96RU2 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
USP28Q96RU2 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC18.6■□□□□ 0.57
USP28Q96RU2 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC18.6■□□□□ 0.57
USP28Q96RU2 AC011270.2-201ENST00000624293 2550 ntBASIC18.6■□□□□ 0.57
USP28Q96RU2 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
USP28Q96RU2 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
USP28Q96RU2 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
USP28Q96RU2 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC18.6■□□□□ 0.57
USP28Q96RU2 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC18.6■□□□□ 0.57
USP28Q96RU2 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
USP28Q96RU2 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
USP28Q96RU2 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
USP28Q96RU2 TPM4P1-201ENST00000436100 807 ntBASIC18.6■□□□□ 0.57
USP28Q96RU2 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC18.6■□□□□ 0.57
USP28Q96RU2 RPL13AP23-201ENST00000480739 586 ntBASIC18.6■□□□□ 0.57
USP28Q96RU2 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC18.6■□□□□ 0.57
USP28Q96RU2 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC18.6■□□□□ 0.57
USP28Q96RU2 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC18.6■□□□□ 0.57
USP28Q96RU2 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC18.6■□□□□ 0.57
USP28Q96RU2 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC18.6■□□□□ 0.57
USP28Q96RU2 AC002347.1-201ENST00000569543 541 ntBASIC18.6■□□□□ 0.57
USP28Q96RU2 FHL2-212ENST00000607522 759 ntTSL 2 BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms