Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CHMP4CQ96CF2 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
CHMP4CQ96CF2 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC19.46■□□□□ 0.71
CHMP4CQ96CF2 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CHMP4CQ96CF2 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC19.46■□□□□ 0.71
CHMP4CQ96CF2 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CHMP4CQ96CF2 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC19.46■□□□□ 0.71
CHMP4CQ96CF2 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.7
CHMP4CQ96CF2 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC19.45■□□□□ 0.7
CHMP4CQ96CF2 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
CHMP4CQ96CF2 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CHMP4CQ96CF2 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHMP4CQ96CF2 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC19.45■□□□□ 0.7
CHMP4CQ96CF2 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC19.45■□□□□ 0.7
CHMP4CQ96CF2 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CHMP4CQ96CF2 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHMP4CQ96CF2 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHMP4CQ96CF2 PMS2P4-201ENST00000412466 1052 ntBASIC19.45■□□□□ 0.7
CHMP4CQ96CF2 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC19.45■□□□□ 0.7
CHMP4CQ96CF2 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC19.45■□□□□ 0.7
CHMP4CQ96CF2 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC19.45■□□□□ 0.7
CHMP4CQ96CF2 IGHV3-62-201ENST00000520057 340 ntBASIC19.45■□□□□ 0.7
CHMP4CQ96CF2 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHMP4CQ96CF2 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHMP4CQ96CF2 AC093512.1-201ENST00000617969 520 ntBASIC19.45■□□□□ 0.7
CHMP4CQ96CF2 AL161645.1-201ENST00000622716 1255 ntBASIC19.45■□□□□ 0.7
CHMP4CQ96CF2 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC19.45■□□□□ 0.7
CHMP4CQ96CF2 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
CHMP4CQ96CF2 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHMP4CQ96CF2 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC19.45■□□□□ 0.7
CHMP4CQ96CF2 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC19.45■□□□□ 0.7
CHMP4CQ96CF2 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHMP4CQ96CF2 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHMP4CQ96CF2 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHMP4CQ96CF2 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC19.45■□□□□ 0.7
CHMP4CQ96CF2 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC19.45■□□□□ 0.7
CHMP4CQ96CF2 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
CHMP4CQ96CF2 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC19.45■□□□□ 0.7
CHMP4CQ96CF2 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
CHMP4CQ96CF2 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC19.45■□□□□ 0.7
CHMP4CQ96CF2 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC19.45■□□□□ 0.7
CHMP4CQ96CF2 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC19.45■□□□□ 0.7
CHMP4CQ96CF2 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHMP4CQ96CF2 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP4CQ96CF2 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP4CQ96CF2 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
CHMP4CQ96CF2 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC19.44■□□□□ 0.7
CHMP4CQ96CF2 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC19.44■□□□□ 0.7
CHMP4CQ96CF2 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
CHMP4CQ96CF2 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
CHMP4CQ96CF2 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP4CQ96CF2 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP4CQ96CF2 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP4CQ96CF2 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC19.44■□□□□ 0.7
CHMP4CQ96CF2 WASH6P-202ENST00000359512 1437 ntBASIC19.44■□□□□ 0.7
CHMP4CQ96CF2 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP4CQ96CF2 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP4CQ96CF2 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP4CQ96CF2 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC19.44■□□□□ 0.7
CHMP4CQ96CF2 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP4CQ96CF2 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC19.44■□□□□ 0.7
CHMP4CQ96CF2 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC19.44■□□□□ 0.7
CHMP4CQ96CF2 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP4CQ96CF2 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP4CQ96CF2 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP4CQ96CF2 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP4CQ96CF2 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC19.44■□□□□ 0.7
CHMP4CQ96CF2 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP4CQ96CF2 AL645939.2-201ENST00000427340 991 ntBASIC19.44■□□□□ 0.7
CHMP4CQ96CF2 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP4CQ96CF2 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP4CQ96CF2 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP4CQ96CF2 FAM86C2P-203ENST00000528684 1004 ntBASIC19.44■□□□□ 0.7
CHMP4CQ96CF2 RFPL4AP1-201ENST00000530883 850 ntBASIC19.44■□□□□ 0.7
CHMP4CQ96CF2 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC19.44■□□□□ 0.7
CHMP4CQ96CF2 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC19.44■□□□□ 0.7
CHMP4CQ96CF2 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC19.44■□□□□ 0.7
CHMP4CQ96CF2 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP4CQ96CF2 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC19.44■□□□□ 0.7
CHMP4CQ96CF2 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC19.44■□□□□ 0.7
CHMP4CQ96CF2 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP4CQ96CF2 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP4CQ96CF2 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP4CQ96CF2 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
CHMP4CQ96CF2 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
CHMP4CQ96CF2 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC19.44■□□□□ 0.7
CHMP4CQ96CF2 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP4CQ96CF2 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP4CQ96CF2 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC19.44■□□□□ 0.7
CHMP4CQ96CF2 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP4CQ96CF2 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CHMP4CQ96CF2 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC19.43■□□□□ 0.7
CHMP4CQ96CF2 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CHMP4CQ96CF2 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHMP4CQ96CF2 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHMP4CQ96CF2 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHMP4CQ96CF2 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHMP4CQ96CF2 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHMP4CQ96CF2 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CHMP4CQ96CF2 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms