Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 CNN2P8-201ENST00000421872 913 ntBASIC20.21■□□□□ 0.83
RC3H1Q5TC82 PHKG1P2-201ENST00000457537 863 ntBASIC20.21■□□□□ 0.83
RC3H1Q5TC82 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC20.21■□□□□ 0.83
RC3H1Q5TC82 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC20.21■□□□□ 0.83
RC3H1Q5TC82 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC20.21■□□□□ 0.83
RC3H1Q5TC82 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC20.21■□□□□ 0.83
RC3H1Q5TC82 RN7SL560P-201ENST00000577943 264 ntBASIC20.21■□□□□ 0.83
RC3H1Q5TC82 METTL26-214ENST00000614890 801 ntTSL 3 BASIC20.21■□□□□ 0.83
RC3H1Q5TC82 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
RC3H1Q5TC82 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC20.21■□□□□ 0.83
RC3H1Q5TC82 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RC3H1Q5TC82 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RC3H1Q5TC82 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RC3H1Q5TC82 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
RC3H1Q5TC82 NF2-208ENST00000403435 2568 ntTSL 5 BASIC20.21■□□□□ 0.83
RC3H1Q5TC82 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RC3H1Q5TC82 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
RC3H1Q5TC82 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
RC3H1Q5TC82 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RC3H1Q5TC82 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
RC3H1Q5TC82 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RC3H1Q5TC82 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RC3H1Q5TC82 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
RC3H1Q5TC82 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC20.2■□□□□ 0.82
RC3H1Q5TC82 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
RC3H1Q5TC82 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RC3H1Q5TC82 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RC3H1Q5TC82 AC022137.2-201ENST00000503482 481 ntBASIC20.2■□□□□ 0.82
RC3H1Q5TC82 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC20.2■□□□□ 0.82
RC3H1Q5TC82 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC20.2■□□□□ 0.82
RC3H1Q5TC82 C2orf69P2-201ENST00000562032 1123 ntBASIC20.2■□□□□ 0.82
RC3H1Q5TC82 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC20.2■□□□□ 0.82
RC3H1Q5TC82 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RC3H1Q5TC82 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RC3H1Q5TC82 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC20.2■□□□□ 0.82
RC3H1Q5TC82 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC20.2■□□□□ 0.82
RC3H1Q5TC82 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC20.2■□□□□ 0.82
RC3H1Q5TC82 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RC3H1Q5TC82 EML3-217ENST00000531557 2509 ntTSL 5 BASIC20.2■□□□□ 0.82
RC3H1Q5TC82 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
RC3H1Q5TC82 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RC3H1Q5TC82 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC20.2■□□□□ 0.82
RC3H1Q5TC82 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
RC3H1Q5TC82 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RC3H1Q5TC82 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RC3H1Q5TC82 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC20.2■□□□□ 0.82
RC3H1Q5TC82 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RC3H1Q5TC82 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
RC3H1Q5TC82 AC009053.2-201ENST00000563701 2365 ntBASIC20.2■□□□□ 0.82
RC3H1Q5TC82 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC20.19■□□□□ 0.82
RC3H1Q5TC82 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC20.19■□□□□ 0.82
RC3H1Q5TC82 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RC3H1Q5TC82 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RC3H1Q5TC82 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RC3H1Q5TC82 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
RC3H1Q5TC82 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RC3H1Q5TC82 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RC3H1Q5TC82 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RC3H1Q5TC82 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC20.19■□□□□ 0.82
RC3H1Q5TC82 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RC3H1Q5TC82 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RC3H1Q5TC82 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RC3H1Q5TC82 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC20.19■□□□□ 0.82
RC3H1Q5TC82 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC20.19■□□□□ 0.82
RC3H1Q5TC82 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RC3H1Q5TC82 KRT8P13-201ENST00000463294 1010 ntBASIC20.19■□□□□ 0.82
RC3H1Q5TC82 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC20.19■□□□□ 0.82
RC3H1Q5TC82 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC20.19■□□□□ 0.82
RC3H1Q5TC82 ATF5-205ENST00000600336 682 ntTSL 2 BASIC20.19■□□□□ 0.82
RC3H1Q5TC82 AC009542.2-202ENST00000619004 1067 ntBASIC20.19■□□□□ 0.82
RC3H1Q5TC82 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC20.19■□□□□ 0.82
RC3H1Q5TC82 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC20.19■□□□□ 0.82
RC3H1Q5TC82 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RC3H1Q5TC82 GCK-202ENST00000345378 2421 ntTSL 2 BASIC20.19■□□□□ 0.82
RC3H1Q5TC82 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
RC3H1Q5TC82 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RC3H1Q5TC82 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RC3H1Q5TC82 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC20.19■□□□□ 0.82
RC3H1Q5TC82 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC20.19■□□□□ 0.82
RC3H1Q5TC82 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC20.19■□□□□ 0.82
RC3H1Q5TC82 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RC3H1Q5TC82 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RC3H1Q5TC82 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
RC3H1Q5TC82 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC20.18■□□□□ 0.82
RC3H1Q5TC82 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RC3H1Q5TC82 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RC3H1Q5TC82 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RC3H1Q5TC82 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RC3H1Q5TC82 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC20.18■□□□□ 0.82
RC3H1Q5TC82 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RC3H1Q5TC82 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
RC3H1Q5TC82 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RC3H1Q5TC82 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RC3H1Q5TC82 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RC3H1Q5TC82 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC20.18■□□□□ 0.82
RC3H1Q5TC82 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC20.18■□□□□ 0.82
RC3H1Q5TC82 AC006033.1-201ENST00000440505 426 ntBASIC20.18■□□□□ 0.82
RC3H1Q5TC82 RPL8-205ENST00000527914 551 ntTSL 3 BASIC20.18■□□□□ 0.82
RC3H1Q5TC82 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RC3H1Q5TC82 AC243960.2-201ENST00000600996 747 ntBASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms