Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
HMGCS2P54868 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
HMGCS2P54868 AL391069.4-201ENST00000609583 481 ntBASIC18.65■□□□□ 0.58
HMGCS2P54868 AL033527.4-201ENST00000641026 673 ntBASIC18.65■□□□□ 0.58
HMGCS2P54868 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
HMGCS2P54868 PCDHB18P-201ENST00000524813 2368 ntBASIC18.65■□□□□ 0.58
HMGCS2P54868 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
HMGCS2P54868 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HMGCS2P54868 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
HMGCS2P54868 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HMGCS2P54868 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HMGCS2P54868 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HMGCS2P54868 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
HMGCS2P54868 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HMGCS2P54868 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HMGCS2P54868 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HMGCS2P54868 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HMGCS2P54868 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HMGCS2P54868 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HMGCS2P54868 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HMGCS2P54868 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
HMGCS2P54868 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC18.65■□□□□ 0.58
HMGCS2P54868 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
HMGCS2P54868 AC009053.2-201ENST00000563701 2365 ntBASIC18.64■□□□□ 0.58
HMGCS2P54868 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
HMGCS2P54868 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
HMGCS2P54868 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
HMGCS2P54868 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
HMGCS2P54868 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.58
HMGCS2P54868 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HMGCS2P54868 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC18.64■□□□□ 0.57
HMGCS2P54868 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HMGCS2P54868 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HMGCS2P54868 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC18.64■□□□□ 0.57
HMGCS2P54868 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HMGCS2P54868 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HMGCS2P54868 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.57
HMGCS2P54868 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HMGCS2P54868 ANKRD19P-201ENST00000338192 862 ntBASIC18.64■□□□□ 0.57
HMGCS2P54868 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HMGCS2P54868 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
HMGCS2P54868 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HMGCS2P54868 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HMGCS2P54868 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC18.64■□□□□ 0.57
HMGCS2P54868 RPL28-204ENST00000431533 590 ntTSL 2 BASIC18.64■□□□□ 0.57
HMGCS2P54868 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC18.64■□□□□ 0.57
HMGCS2P54868 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
HMGCS2P54868 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC18.64■□□□□ 0.57
HMGCS2P54868 RPL28-206ENST00000558752 671 ntTSL 3 BASIC18.64■□□□□ 0.57
HMGCS2P54868 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC18.64■□□□□ 0.57
HMGCS2P54868 AP005482.1-201ENST00000563722 1273 ntBASIC18.64■□□□□ 0.57
HMGCS2P54868 AC133552.6-201ENST00000613406 534 ntBASIC18.64■□□□□ 0.57
HMGCS2P54868 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HMGCS2P54868 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HMGCS2P54868 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HMGCS2P54868 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
HMGCS2P54868 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
HMGCS2P54868 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
HMGCS2P54868 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
HMGCS2P54868 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
HMGCS2P54868 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HMGCS2P54868 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC18.63■□□□□ 0.57
HMGCS2P54868 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGCS2P54868 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGCS2P54868 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
HMGCS2P54868 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
HMGCS2P54868 NF2-208ENST00000403435 2568 ntTSL 5 BASIC18.63■□□□□ 0.57
HMGCS2P54868 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC18.63■□□□□ 0.57
HMGCS2P54868 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HMGCS2P54868 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGCS2P54868 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC18.63■□□□□ 0.57
HMGCS2P54868 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
HMGCS2P54868 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGCS2P54868 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGCS2P54868 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGCS2P54868 AC004987.2-201ENST00000395959 1148 ntBASIC18.63■□□□□ 0.57
HMGCS2P54868 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGCS2P54868 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC18.63■□□□□ 0.57
HMGCS2P54868 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC18.63■□□□□ 0.57
HMGCS2P54868 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC18.63■□□□□ 0.57
HMGCS2P54868 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC18.63■□□□□ 0.57
HMGCS2P54868 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC18.63■□□□□ 0.57
HMGCS2P54868 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HMGCS2P54868 AL158212.4-201ENST00000624062 1286 ntBASIC18.63■□□□□ 0.57
HMGCS2P54868 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGCS2P54868 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC18.63■□□□□ 0.57
HMGCS2P54868 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HMGCS2P54868 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGCS2P54868 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC18.63■□□□□ 0.57
HMGCS2P54868 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGCS2P54868 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
HMGCS2P54868 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
HMGCS2P54868 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGCS2P54868 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC18.63■□□□□ 0.57
HMGCS2P54868 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
HMGCS2P54868 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGCS2P54868 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGCS2P54868 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HMGCS2P54868 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGCS2P54868 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms