Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL4A4P53420 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC17.13■□□□□ 0.33
COL4A4P53420 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
COL4A4P53420 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
COL4A4P53420 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
COL4A4P53420 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL4A4P53420 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC17.13■□□□□ 0.33
COL4A4P53420 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL4A4P53420 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC17.13■□□□□ 0.33
COL4A4P53420 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
COL4A4P53420 TPO-206ENST00000382269 1155 ntTSL 5 BASIC17.13■□□□□ 0.33
COL4A4P53420 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL4A4P53420 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC17.13■□□□□ 0.33
COL4A4P53420 DUX4L45-201ENST00000566406 1057 ntBASIC17.13■□□□□ 0.33
COL4A4P53420 AL049840.4-201ENST00000602422 811 ntBASIC17.13■□□□□ 0.33
COL4A4P53420 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC17.13■□□□□ 0.33
COL4A4P53420 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL4A4P53420 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL4A4P53420 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
COL4A4P53420 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL4A4P53420 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL4A4P53420 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL4A4P53420 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
COL4A4P53420 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
COL4A4P53420 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A4P53420 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A4P53420 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
COL4A4P53420 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A4P53420 Z97205.2-201ENST00000564697 1639 ntBASIC17.12■□□□□ 0.33
COL4A4P53420 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A4P53420 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A4P53420 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC17.12■□□□□ 0.33
COL4A4P53420 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A4P53420 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A4P53420 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
COL4A4P53420 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A4P53420 APOA1-205ENST00000375329 927 ntTSL 2 BASIC17.12■□□□□ 0.33
COL4A4P53420 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A4P53420 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC17.12■□□□□ 0.33
COL4A4P53420 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC17.12■□□□□ 0.33
COL4A4P53420 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC17.12■□□□□ 0.33
COL4A4P53420 EEF1DP4-201ENST00000446006 880 ntBASIC17.12■□□□□ 0.33
COL4A4P53420 AC245100.5-201ENST00000452108 331 ntBASIC17.12■□□□□ 0.33
COL4A4P53420 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC17.12■□□□□ 0.33
COL4A4P53420 RPL13AP20-201ENST00000459725 609 ntBASIC17.12■□□□□ 0.33
COL4A4P53420 FAM86HP-204ENST00000513466 959 ntBASIC17.12■□□□□ 0.33
COL4A4P53420 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC17.12■□□□□ 0.33
COL4A4P53420 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC17.12■□□□□ 0.33
COL4A4P53420 AC010328.2-201ENST00000597698 1111 ntBASIC17.12■□□□□ 0.33
COL4A4P53420 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC17.12■□□□□ 0.33
COL4A4P53420 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A4P53420 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A4P53420 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A4P53420 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A4P53420 ALOX12P2-203ENST00000570921 1945 ntBASIC17.12■□□□□ 0.33
COL4A4P53420 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A4P53420 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
COL4A4P53420 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC17.12■□□□□ 0.33
COL4A4P53420 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC17.12■□□□□ 0.33
COL4A4P53420 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A4P53420 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC17.12■□□□□ 0.33
COL4A4P53420 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A4P53420 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
COL4A4P53420 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC17.11■□□□□ 0.33
COL4A4P53420 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL4A4P53420 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL4A4P53420 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
COL4A4P53420 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC17.11■□□□□ 0.33
COL4A4P53420 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL4A4P53420 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC17.11■□□□□ 0.33
COL4A4P53420 POU5F1P6-201ENST00000466990 990 ntBASIC17.11■□□□□ 0.33
COL4A4P53420 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC17.11■□□□□ 0.33
COL4A4P53420 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC17.11■□□□□ 0.33
COL4A4P53420 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC17.11■□□□□ 0.33
COL4A4P53420 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC17.11■□□□□ 0.33
COL4A4P53420 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC17.11■□□□□ 0.33
COL4A4P53420 SPIB-207ENST00000597855 564 ntTSL 4 BASIC17.11■□□□□ 0.33
COL4A4P53420 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
COL4A4P53420 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC17.11■□□□□ 0.33
COL4A4P53420 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC17.11■□□□□ 0.33
COL4A4P53420 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL4A4P53420 LOX-206ENST00000639739 1626 ntTSL 5 BASIC17.11■□□□□ 0.33
COL4A4P53420 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
COL4A4P53420 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL4A4P53420 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL4A4P53420 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC17.11■□□□□ 0.33
COL4A4P53420 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL4A4P53420 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC17.11■□□□□ 0.33
COL4A4P53420 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC17.11■□□□□ 0.33
COL4A4P53420 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL4A4P53420 AL592424.1-201ENST00000563624 1536 ntBASIC17.11■□□□□ 0.33
COL4A4P53420 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL4A4P53420 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL4A4P53420 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC17.11■□□□□ 0.33
COL4A4P53420 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL4A4P53420 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL4A4P53420 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL4A4P53420 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL4A4P53420 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
COL4A4P53420 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 62.6 ms