Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC21.04■□□□□ 0.96
COL18A1P39060 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
COL18A1P39060 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL18A1P39060 AC078819.1-201ENST00000547454 765 ntBASIC21.04■□□□□ 0.96
COL18A1P39060 AC012085.1-201ENST00000548270 765 ntBASIC21.04■□□□□ 0.96
COL18A1P39060 KC6-205ENST00000599934 556 ntTSL 4 BASIC21.04■□□□□ 0.96
COL18A1P39060 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC21.04■□□□□ 0.96
COL18A1P39060 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC21.04■□□□□ 0.96
COL18A1P39060 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC21.04■□□□□ 0.96
COL18A1P39060 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC21.04■□□□□ 0.96
COL18A1P39060 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL18A1P39060 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
COL18A1P39060 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
COL18A1P39060 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC21.04■□□□□ 0.96
COL18A1P39060 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL18A1P39060 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL18A1P39060 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL18A1P39060 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL18A1P39060 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC21.03■□□□□ 0.96
COL18A1P39060 AC093813.1-201ENST00000605066 256 ntBASIC21.03■□□□□ 0.96
COL18A1P39060 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
COL18A1P39060 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL18A1P39060 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL18A1P39060 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
COL18A1P39060 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC21.03■□□□□ 0.96
COL18A1P39060 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC21.03■□□□□ 0.96
COL18A1P39060 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
COL18A1P39060 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL18A1P39060 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL18A1P39060 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
COL18A1P39060 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
COL18A1P39060 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL18A1P39060 AL133267.1-201ENST00000398220 340 ntBASIC21.02■□□□□ 0.96
COL18A1P39060 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC21.02■□□□□ 0.96
COL18A1P39060 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
COL18A1P39060 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC21.02■□□□□ 0.96
COL18A1P39060 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
COL18A1P39060 RNA5SP423-201ENST00000517127 109 ntBASIC21.02■□□□□ 0.96
COL18A1P39060 HNRNPA1P48-202ENST00000565308 961 ntBASIC21.02■□□□□ 0.96
COL18A1P39060 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC21.02■□□□□ 0.96
COL18A1P39060 AL021578.1-201ENST00000613646 709 ntBASIC21.02■□□□□ 0.96
COL18A1P39060 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL18A1P39060 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC21.02■□□□□ 0.96
COL18A1P39060 AL138709.1-201ENST00000614840 1693 ntBASIC21.02■□□□□ 0.96
COL18A1P39060 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC21.02■□□□□ 0.96
COL18A1P39060 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
COL18A1P39060 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL18A1P39060 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL18A1P39060 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
COL18A1P39060 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC21.02■□□□□ 0.96
COL18A1P39060 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL18A1P39060 RNU1-114P-201ENST00000365297 166 ntBASIC21.02■□□□□ 0.96
COL18A1P39060 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC21.02■□□□□ 0.96
COL18A1P39060 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
COL18A1P39060 KRT8P13-201ENST00000463294 1010 ntBASIC21.02■□□□□ 0.96
COL18A1P39060 GAPDHP40-201ENST00000505218 1006 ntBASIC21.02■□□□□ 0.96
COL18A1P39060 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
COL18A1P39060 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC21.02■□□□□ 0.96
COL18A1P39060 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
COL18A1P39060 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC21.02■□□□□ 0.96
COL18A1P39060 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC21.02■□□□□ 0.96
COL18A1P39060 PPA1-206ENST00000625364 644 ntTSL 5 BASIC21.02■□□□□ 0.96
COL18A1P39060 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC21.02■□□□□ 0.96
COL18A1P39060 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.95
COL18A1P39060 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
COL18A1P39060 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
COL18A1P39060 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
COL18A1P39060 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.95
COL18A1P39060 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
COL18A1P39060 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
COL18A1P39060 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC21.01■□□□□ 0.95
COL18A1P39060 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
COL18A1P39060 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
COL18A1P39060 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL18A1P39060 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC21.01■□□□□ 0.95
COL18A1P39060 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC21.01■□□□□ 0.95
COL18A1P39060 AL008638.5-201ENST00000623814 1298 ntBASIC21.01■□□□□ 0.95
COL18A1P39060 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
COL18A1P39060 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL18A1P39060 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC21.01■□□□□ 0.95
COL18A1P39060 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL18A1P39060 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
COL18A1P39060 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL18A1P39060 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC21.01■□□□□ 0.95
COL18A1P39060 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL18A1P39060 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
COL18A1P39060 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
COL18A1P39060 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC21■□□□□ 0.95
COL18A1P39060 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL18A1P39060 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC21■□□□□ 0.95
COL18A1P39060 AHRR-211ENST00000515206 462 ntTSL 5 BASIC21■□□□□ 0.95
COL18A1P39060 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL18A1P39060 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC21■□□□□ 0.95
COL18A1P39060 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC21■□□□□ 0.95
COL18A1P39060 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC21■□□□□ 0.95
COL18A1P39060 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC21■□□□□ 0.95
COL18A1P39060 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC21■□□□□ 0.95
COL18A1P39060 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL18A1P39060 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL18A1P39060 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC21■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms