Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC18.27■□□□□ 0.52
CIITAP33076 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC18.27■□□□□ 0.52
CIITAP33076 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC18.27■□□□□ 0.52
CIITAP33076 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CIITAP33076 AC027369.6-201ENST00000525520 931 ntBASIC18.27■□□□□ 0.52
CIITAP33076 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CIITAP33076 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC18.27■□□□□ 0.52
CIITAP33076 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC18.27■□□□□ 0.52
CIITAP33076 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CIITAP33076 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC18.27■□□□□ 0.52
CIITAP33076 SP100-205ENST00000409824 1802 ntTSL 5 BASIC18.27■□□□□ 0.52
CIITAP33076 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
CIITAP33076 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC18.27■□□□□ 0.52
CIITAP33076 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CIITAP33076 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
CIITAP33076 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CIITAP33076 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC18.27■□□□□ 0.51
CIITAP33076 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
CIITAP33076 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC18.27■□□□□ 0.51
CIITAP33076 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
CIITAP33076 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
CIITAP33076 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC18.27■□□□□ 0.51
CIITAP33076 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
CIITAP33076 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CIITAP33076 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
CIITAP33076 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
CIITAP33076 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
CIITAP33076 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CIITAP33076 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
CIITAP33076 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CIITAP33076 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC18.26■□□□□ 0.51
CIITAP33076 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CIITAP33076 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CIITAP33076 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CIITAP33076 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC18.26■□□□□ 0.51
CIITAP33076 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CIITAP33076 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CIITAP33076 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CIITAP33076 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
CIITAP33076 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CIITAP33076 AC100757.3-201ENST00000622361 1406 ntBASIC18.26■□□□□ 0.51
CIITAP33076 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
CIITAP33076 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC18.26■□□□□ 0.51
CIITAP33076 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC18.26■□□□□ 0.51
CIITAP33076 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
CIITAP33076 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CIITAP33076 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CIITAP33076 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CIITAP33076 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CIITAP33076 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CIITAP33076 AC241585.1-201ENST00000433527 519 ntBASIC18.26■□□□□ 0.51
CIITAP33076 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC18.26■□□□□ 0.51
CIITAP33076 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC18.26■□□□□ 0.51
CIITAP33076 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC18.26■□□□□ 0.51
CIITAP33076 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC18.26■□□□□ 0.51
CIITAP33076 AC243562.2-201ENST00000561247 970 ntBASIC18.26■□□□□ 0.51
CIITAP33076 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CIITAP33076 PRR29-209ENST00000582540 967 ntTSL 2 BASIC18.26■□□□□ 0.51
CIITAP33076 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CIITAP33076 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC18.26■□□□□ 0.51
CIITAP33076 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
CIITAP33076 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CIITAP33076 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
CIITAP33076 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CIITAP33076 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
CIITAP33076 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
CIITAP33076 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CIITAP33076 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CIITAP33076 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC18.26■□□□□ 0.51
CIITAP33076 AP001282.1-201ENST00000531301 1499 ntBASIC18.26■□□□□ 0.51
CIITAP33076 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC18.26■□□□□ 0.51
CIITAP33076 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC18.26■□□□□ 0.51
CIITAP33076 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
CIITAP33076 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC18.25■□□□□ 0.51
CIITAP33076 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CIITAP33076 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CIITAP33076 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CIITAP33076 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CIITAP33076 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
CIITAP33076 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC18.25■□□□□ 0.51
CIITAP33076 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC18.25■□□□□ 0.51
CIITAP33076 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CIITAP33076 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC18.25■□□□□ 0.51
CIITAP33076 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CIITAP33076 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC18.25■□□□□ 0.51
CIITAP33076 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CIITAP33076 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CIITAP33076 SYS1-203ENST00000414310 795 ntTSL 3 BASIC18.25■□□□□ 0.51
CIITAP33076 AC004890.2-204ENST00000481968 304 ntBASIC18.25■□□□□ 0.51
CIITAP33076 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC18.25■□□□□ 0.51
CIITAP33076 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC18.25■□□□□ 0.51
CIITAP33076 MPI-209ENST00000564003 1195 ntTSL 2 BASIC18.25■□□□□ 0.51
CIITAP33076 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
CIITAP33076 WT1-209ENST00000530998 2421 ntTSL 2 BASIC18.25■□□□□ 0.51
CIITAP33076 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CIITAP33076 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
CIITAP33076 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CIITAP33076 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC18.25■□□□□ 0.51
CIITAP33076 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CIITAP33076 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms