Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC16.46■□□□□ 0.23
VIMP08670 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC16.46■□□□□ 0.23
VIMP08670 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VIMP08670 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC16.46■□□□□ 0.23
VIMP08670 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VIMP08670 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
VIMP08670 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
VIMP08670 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
VIMP08670 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
VIMP08670 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
VIMP08670 PC-214ENST00000628663 1470 ntTSL 5 BASIC16.46■□□□□ 0.23
VIMP08670 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
VIMP08670 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC16.46■□□□□ 0.23
VIMP08670 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
VIMP08670 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
VIMP08670 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
VIMP08670 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VIMP08670 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
VIMP08670 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
VIMP08670 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VIMP08670 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VIMP08670 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.45■□□□□ 0.22
VIMP08670 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC16.45■□□□□ 0.22
VIMP08670 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VIMP08670 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VIMP08670 MECR-202ENST00000373791 2416 ntTSL 2 BASIC16.45■□□□□ 0.22
VIMP08670 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VIMP08670 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
VIMP08670 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VIMP08670 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VIMP08670 BAALC-202ENST00000306391 243 ntTSL 5 BASIC16.45■□□□□ 0.22
VIMP08670 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VIMP08670 BAALC-204ENST00000330955 222 ntTSL 5 BASIC16.45■□□□□ 0.22
VIMP08670 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VIMP08670 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VIMP08670 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VIMP08670 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC16.45■□□□□ 0.22
VIMP08670 SIGLEC30P-201ENST00000455569 941 ntBASIC16.45■□□□□ 0.22
VIMP08670 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC16.45■□□□□ 0.22
VIMP08670 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VIMP08670 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC16.45■□□□□ 0.22
VIMP08670 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC16.45■□□□□ 0.22
VIMP08670 ABBA01031661.1-201ENST00000634362 1253 ntBASIC16.45■□□□□ 0.22
VIMP08670 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
VIMP08670 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
VIMP08670 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
VIMP08670 AC243591.1-201ENST00000452967 1364 ntBASIC16.45■□□□□ 0.22
VIMP08670 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VIMP08670 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
VIMP08670 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC16.45■□□□□ 0.22
VIMP08670 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC16.45■□□□□ 0.22
VIMP08670 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC16.45■□□□□ 0.22
VIMP08670 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VIMP08670 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VIMP08670 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VIMP08670 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC16.45■□□□□ 0.22
VIMP08670 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VIMP08670 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
VIMP08670 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
VIMP08670 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VIMP08670 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VIMP08670 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC16.45■□□□□ 0.22
VIMP08670 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VIMP08670 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC16.45■□□□□ 0.22
VIMP08670 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC16.45■□□□□ 0.22
VIMP08670 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC16.45■□□□□ 0.22
VIMP08670 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VIMP08670 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VIMP08670 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VIMP08670 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
VIMP08670 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
VIMP08670 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VIMP08670 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC16.44■□□□□ 0.22
VIMP08670 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VIMP08670 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC16.44■□□□□ 0.22
VIMP08670 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC16.44■□□□□ 0.22
VIMP08670 GPAA1P2-202ENST00000606848 1787 ntBASIC16.44■□□□□ 0.22
VIMP08670 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VIMP08670 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
VIMP08670 CNTNAP3P2-201ENST00000617175 3861 ntBASIC16.44■□□□□ 0.22
VIMP08670 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC16.44■□□□□ 0.22
VIMP08670 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VIMP08670 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC16.44■□□□□ 0.22
VIMP08670 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
VIMP08670 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VIMP08670 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
VIMP08670 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
VIMP08670 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VIMP08670 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VIMP08670 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC16.44■□□□□ 0.22
VIMP08670 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC16.44■□□□□ 0.22
VIMP08670 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VIMP08670 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
VIMP08670 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC16.44■□□□□ 0.22
VIMP08670 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
VIMP08670 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VIMP08670 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC16.44■□□□□ 0.22
VIMP08670 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
VIMP08670 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC16.44■□□□□ 0.22
VIMP08670 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms