Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 AC026410.3-201ENST00000514280 936 ntBASIC23.97■■□□□ 1.43
RAPGEF3O95398 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
RAPGEF3O95398 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC23.97■■□□□ 1.43
RAPGEF3O95398 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC23.97■■□□□ 1.43
RAPGEF3O95398 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC23.97■■□□□ 1.43
RAPGEF3O95398 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
RAPGEF3O95398 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC23.96■■□□□ 1.43
RAPGEF3O95398 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
RAPGEF3O95398 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC23.96■■□□□ 1.43
RAPGEF3O95398 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
RAPGEF3O95398 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
RAPGEF3O95398 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC23.96■■□□□ 1.43
RAPGEF3O95398 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC23.96■■□□□ 1.43
RAPGEF3O95398 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
RAPGEF3O95398 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC23.96■■□□□ 1.43
RAPGEF3O95398 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
RAPGEF3O95398 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
RAPGEF3O95398 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC23.96■■□□□ 1.43
RAPGEF3O95398 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
RAPGEF3O95398 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC23.96■■□□□ 1.43
RAPGEF3O95398 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
RAPGEF3O95398 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC23.96■■□□□ 1.43
RAPGEF3O95398 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC23.96■■□□□ 1.43
RAPGEF3O95398 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC23.96■■□□□ 1.43
RAPGEF3O95398 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC23.96■■□□□ 1.43
RAPGEF3O95398 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC23.96■■□□□ 1.43
RAPGEF3O95398 AC145423.3-201ENST00000615987 467 ntBASIC23.96■■□□□ 1.43
RAPGEF3O95398 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC23.96■■□□□ 1.43
RAPGEF3O95398 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC23.96■■□□□ 1.43
RAPGEF3O95398 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC23.96■■□□□ 1.43
RAPGEF3O95398 AC087289.5-201ENST00000586076 3175 ntBASIC23.96■■□□□ 1.43
RAPGEF3O95398 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
RAPGEF3O95398 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
RAPGEF3O95398 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
RAPGEF3O95398 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC23.96■■□□□ 1.43
RAPGEF3O95398 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC23.96■■□□□ 1.43
RAPGEF3O95398 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC23.96■■□□□ 1.43
RAPGEF3O95398 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.43
RAPGEF3O95398 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC23.95■■□□□ 1.43
RAPGEF3O95398 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC23.95■■□□□ 1.42
RAPGEF3O95398 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
RAPGEF3O95398 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC23.95■■□□□ 1.42
RAPGEF3O95398 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC23.95■■□□□ 1.42
RAPGEF3O95398 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC23.95■■□□□ 1.42
RAPGEF3O95398 PTPA-218ENST00000435132 618 ntTSL 2 BASIC23.95■■□□□ 1.42
RAPGEF3O95398 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC23.95■■□□□ 1.42
RAPGEF3O95398 RN7SL720P-201ENST00000488178 304 ntBASIC23.95■■□□□ 1.42
RAPGEF3O95398 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
RAPGEF3O95398 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
RAPGEF3O95398 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC23.95■■□□□ 1.42
RAPGEF3O95398 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC23.95■■□□□ 1.42
RAPGEF3O95398 AC000095.1-201ENST00000603208 874 ntBASIC23.95■■□□□ 1.42
RAPGEF3O95398 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC23.95■■□□□ 1.42
RAPGEF3O95398 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC23.95■■□□□ 1.42
RAPGEF3O95398 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
RAPGEF3O95398 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC23.95■■□□□ 1.42
RAPGEF3O95398 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC23.95■■□□□ 1.42
RAPGEF3O95398 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC23.95■■□□□ 1.42
RAPGEF3O95398 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC23.95■■□□□ 1.42
RAPGEF3O95398 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.42
RAPGEF3O95398 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC23.95■■□□□ 1.42
RAPGEF3O95398 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC23.95■■□□□ 1.42
RAPGEF3O95398 BNIP3P1-202ENST00000550043 1585 ntBASIC23.95■■□□□ 1.42
RAPGEF3O95398 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
RAPGEF3O95398 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
RAPGEF3O95398 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
RAPGEF3O95398 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
RAPGEF3O95398 DRD5P1-201ENST00000456605 1438 ntBASIC23.94■■□□□ 1.42
RAPGEF3O95398 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC23.94■■□□□ 1.42
RAPGEF3O95398 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC23.94■■□□□ 1.42
RAPGEF3O95398 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC23.94■■□□□ 1.42
RAPGEF3O95398 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC23.94■■□□□ 1.42
RAPGEF3O95398 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC23.94■■□□□ 1.42
RAPGEF3O95398 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
RAPGEF3O95398 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
RAPGEF3O95398 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
RAPGEF3O95398 AC016700.1-201ENST00000429424 312 ntBASIC23.94■■□□□ 1.42
RAPGEF3O95398 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC23.94■■□□□ 1.42
RAPGEF3O95398 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC23.94■■□□□ 1.42
RAPGEF3O95398 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC23.94■■□□□ 1.42
RAPGEF3O95398 NKG7-204ENST00000595217 816 ntTSL 2 BASIC23.94■■□□□ 1.42
RAPGEF3O95398 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC23.94■■□□□ 1.42
RAPGEF3O95398 AC009053.2-201ENST00000563701 2365 ntBASIC23.94■■□□□ 1.42
RAPGEF3O95398 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
RAPGEF3O95398 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
RAPGEF3O95398 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC23.94■■□□□ 1.42
RAPGEF3O95398 LETM1P2-201ENST00000597330 2178 ntBASIC23.93■■□□□ 1.42
RAPGEF3O95398 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
RAPGEF3O95398 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
RAPGEF3O95398 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC23.93■■□□□ 1.42
RAPGEF3O95398 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC23.93■■□□□ 1.42
RAPGEF3O95398 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
RAPGEF3O95398 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
RAPGEF3O95398 AC245884.6-201ENST00000515672 1067 ntBASIC23.93■■□□□ 1.42
RAPGEF3O95398 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC23.93■■□□□ 1.42
RAPGEF3O95398 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC23.93■■□□□ 1.42
RAPGEF3O95398 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC23.93■■□□□ 1.42
RAPGEF3O95398 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC23.93■■□□□ 1.42
RAPGEF3O95398 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
RAPGEF3O95398 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms