Protein–RNA interactions for Protein: Q9H270

VPS11, Vacuolar protein sorting-associated protein 11 homolog, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11Q9H270 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC16.48■□□□□ 0.23
VPS11Q9H270 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS11Q9H270 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC16.48■□□□□ 0.23
VPS11Q9H270 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS11Q9H270 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VPS11Q9H270 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC16.48■□□□□ 0.23
VPS11Q9H270 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS11Q9H270 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS11Q9H270 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
VPS11Q9H270 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VPS11Q9H270 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
VPS11Q9H270 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS11Q9H270 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC16.48■□□□□ 0.23
VPS11Q9H270 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS11Q9H270 PPT1-215ENST00000641471 2368 ntBASIC16.48■□□□□ 0.23
VPS11Q9H270 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS11Q9H270 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS11Q9H270 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS11Q9H270 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
VPS11Q9H270 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
VPS11Q9H270 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS11Q9H270 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC16.47■□□□□ 0.23
VPS11Q9H270 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS11Q9H270 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
VPS11Q9H270 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
VPS11Q9H270 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VPS11Q9H270 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC16.47■□□□□ 0.23
VPS11Q9H270 MIR648-201ENST00000385046 94 ntBASIC16.47■□□□□ 0.23
VPS11Q9H270 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC16.47■□□□□ 0.23
VPS11Q9H270 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
VPS11Q9H270 LAGE3P1-201ENST00000425356 484 ntBASIC16.47■□□□□ 0.23
VPS11Q9H270 RPS15P9-201ENST00000494093 319 ntBASIC16.47■□□□□ 0.23
VPS11Q9H270 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VPS11Q9H270 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC16.47■□□□□ 0.23
VPS11Q9H270 PRELID1P1-202ENST00000567272 903 ntBASIC16.47■□□□□ 0.23
VPS11Q9H270 NT5C-211ENST00000582170 653 ntTSL 3 BASIC16.47■□□□□ 0.23
VPS11Q9H270 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC16.47■□□□□ 0.23
VPS11Q9H270 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC16.47■□□□□ 0.23
VPS11Q9H270 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VPS11Q9H270 BSG-214ENST00000614867 960 ntTSL 3 BASIC16.47■□□□□ 0.23
VPS11Q9H270 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC16.47■□□□□ 0.23
VPS11Q9H270 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS11Q9H270 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC16.47■□□□□ 0.23
VPS11Q9H270 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC16.47■□□□□ 0.23
VPS11Q9H270 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VPS11Q9H270 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
VPS11Q9H270 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VPS11Q9H270 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS11Q9H270 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
VPS11Q9H270 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS11Q9H270 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC16.47■□□□□ 0.23
VPS11Q9H270 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS11Q9H270 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VPS11Q9H270 TNRC18P2-201ENST00000417666 2714 ntBASIC16.47■□□□□ 0.23
VPS11Q9H270 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS11Q9H270 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC16.46■□□□□ 0.23
VPS11Q9H270 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC16.46■□□□□ 0.23
VPS11Q9H270 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
VPS11Q9H270 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
VPS11Q9H270 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS11Q9H270 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS11Q9H270 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS11Q9H270 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS11Q9H270 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS11Q9H270 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC16.46■□□□□ 0.23
VPS11Q9H270 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
VPS11Q9H270 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS11Q9H270 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC16.46■□□□□ 0.23
VPS11Q9H270 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
VPS11Q9H270 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS11Q9H270 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS11Q9H270 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
VPS11Q9H270 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
VPS11Q9H270 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS11Q9H270 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
VPS11Q9H270 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC16.46■□□□□ 0.23
VPS11Q9H270 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
VPS11Q9H270 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS11Q9H270 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC16.46■□□□□ 0.23
VPS11Q9H270 IRF8-202ENST00000562492 946 ntTSL 3 BASIC16.46■□□□□ 0.23
VPS11Q9H270 AC005412.3-201ENST00000580309 715 ntBASIC16.46■□□□□ 0.23
VPS11Q9H270 PNMT-203ENST00000581428 677 ntTSL 2 BASIC16.46■□□□□ 0.23
VPS11Q9H270 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS11Q9H270 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC16.46■□□□□ 0.23
VPS11Q9H270 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC16.46■□□□□ 0.23
VPS11Q9H270 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
VPS11Q9H270 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC16.46■□□□□ 0.23
VPS11Q9H270 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS11Q9H270 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
VPS11Q9H270 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
VPS11Q9H270 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS11Q9H270 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC16.46■□□□□ 0.23
VPS11Q9H270 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC16.46■□□□□ 0.23
VPS11Q9H270 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VPS11Q9H270 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC16.46■□□□□ 0.23
VPS11Q9H270 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
VPS11Q9H270 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC16.46■□□□□ 0.22
VPS11Q9H270 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
VPS11Q9H270 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
VPS11Q9H270 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 154.9 ms