Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC20.67■□□□□ 0.9
SHANK3Q9BYB0 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC20.67■□□□□ 0.9
SHANK3Q9BYB0 YBX1P6-201ENST00000442962 1002 ntBASIC20.67■□□□□ 0.9
SHANK3Q9BYB0 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC20.67■□□□□ 0.9
SHANK3Q9BYB0 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC20.67■□□□□ 0.9
SHANK3Q9BYB0 AC079316.1-201ENST00000548397 411 ntBASIC20.67■□□□□ 0.9
SHANK3Q9BYB0 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC20.67■□□□□ 0.9
SHANK3Q9BYB0 IFT20-206ENST00000578122 834 ntTSL 2 BASIC20.67■□□□□ 0.9
SHANK3Q9BYB0 IFT20-208ENST00000578985 831 ntTSL 3 BASIC20.67■□□□□ 0.9
SHANK3Q9BYB0 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC20.67■□□□□ 0.9
SHANK3Q9BYB0 KLK3-211ENST00000597483 810 ntTSL 2 BASIC20.67■□□□□ 0.9
SHANK3Q9BYB0 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC20.67■□□□□ 0.9
SHANK3Q9BYB0 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC20.67■□□□□ 0.9
SHANK3Q9BYB0 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC20.67■□□□□ 0.9
SHANK3Q9BYB0 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SHANK3Q9BYB0 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SHANK3Q9BYB0 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SHANK3Q9BYB0 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
SHANK3Q9BYB0 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC20.67■□□□□ 0.9
SHANK3Q9BYB0 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
SHANK3Q9BYB0 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SHANK3Q9BYB0 AC134312.5-201ENST00000568031 1313 ntBASIC20.67■□□□□ 0.9
SHANK3Q9BYB0 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SHANK3Q9BYB0 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
SHANK3Q9BYB0 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC20.67■□□□□ 0.9
SHANK3Q9BYB0 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
SHANK3Q9BYB0 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC20.67■□□□□ 0.9
SHANK3Q9BYB0 FXNP2-201ENST00000411625 547 ntBASIC20.67■□□□□ 0.9
SHANK3Q9BYB0 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC20.67■□□□□ 0.9
SHANK3Q9BYB0 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC20.67■□□□□ 0.9
SHANK3Q9BYB0 AC026410.3-201ENST00000514280 936 ntBASIC20.67■□□□□ 0.9
SHANK3Q9BYB0 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC20.67■□□□□ 0.9
SHANK3Q9BYB0 ENPP7P5-201ENST00000541031 1031 ntBASIC20.67■□□□□ 0.9
SHANK3Q9BYB0 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC20.67■□□□□ 0.9
SHANK3Q9BYB0 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
SHANK3Q9BYB0 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
SHANK3Q9BYB0 AL450472.2-201ENST00000603663 1156 ntBASIC20.67■□□□□ 0.9
SHANK3Q9BYB0 PRKN-211ENST00000615065 261 ntTSL 5 BASIC20.67■□□□□ 0.9
SHANK3Q9BYB0 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC20.66■□□□□ 0.9
SHANK3Q9BYB0 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SHANK3Q9BYB0 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SHANK3Q9BYB0 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SHANK3Q9BYB0 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SHANK3Q9BYB0 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SHANK3Q9BYB0 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC20.66■□□□□ 0.9
SHANK3Q9BYB0 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC20.66■□□□□ 0.9
SHANK3Q9BYB0 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
SHANK3Q9BYB0 DRD5P1-201ENST00000456605 1438 ntBASIC20.66■□□□□ 0.9
SHANK3Q9BYB0 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SHANK3Q9BYB0 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC20.66■□□□□ 0.9
SHANK3Q9BYB0 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SHANK3Q9BYB0 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SHANK3Q9BYB0 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SHANK3Q9BYB0 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
SHANK3Q9BYB0 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
SHANK3Q9BYB0 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC20.66■□□□□ 0.9
SHANK3Q9BYB0 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SHANK3Q9BYB0 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC20.66■□□□□ 0.9
SHANK3Q9BYB0 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC20.66■□□□□ 0.9
SHANK3Q9BYB0 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC20.66■□□□□ 0.9
SHANK3Q9BYB0 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC20.66■□□□□ 0.9
SHANK3Q9BYB0 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
SHANK3Q9BYB0 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
SHANK3Q9BYB0 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SHANK3Q9BYB0 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SHANK3Q9BYB0 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SHANK3Q9BYB0 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SHANK3Q9BYB0 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
SHANK3Q9BYB0 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC20.65■□□□□ 0.9
SHANK3Q9BYB0 PHKG1P2-201ENST00000457537 863 ntBASIC20.65■□□□□ 0.9
SHANK3Q9BYB0 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC20.65■□□□□ 0.9
SHANK3Q9BYB0 MIR3615-201ENST00000581999 87 ntBASIC20.65■□□□□ 0.9
SHANK3Q9BYB0 NAT9-224ENST00000583757 583 ntTSL 3 BASIC20.65■□□□□ 0.9
SHANK3Q9BYB0 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SHANK3Q9BYB0 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
SHANK3Q9BYB0 SNX1-214ENST00000625244 324 ntTSL 5 BASIC20.65■□□□□ 0.9
SHANK3Q9BYB0 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC20.65■□□□□ 0.9
SHANK3Q9BYB0 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC20.65■□□□□ 0.9
SHANK3Q9BYB0 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
SHANK3Q9BYB0 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
SHANK3Q9BYB0 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC20.65■□□□□ 0.9
SHANK3Q9BYB0 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SHANK3Q9BYB0 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SHANK3Q9BYB0 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC20.65■□□□□ 0.9
SHANK3Q9BYB0 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SHANK3Q9BYB0 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SHANK3Q9BYB0 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
SHANK3Q9BYB0 BRF1-202ENST00000379932 884 ntTSL 5 BASIC20.64■□□□□ 0.9
SHANK3Q9BYB0 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC20.64■□□□□ 0.9
SHANK3Q9BYB0 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.9
SHANK3Q9BYB0 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
SHANK3Q9BYB0 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC20.64■□□□□ 0.9
SHANK3Q9BYB0 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC20.64■□□□□ 0.9
SHANK3Q9BYB0 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC20.64■□□□□ 0.9
SHANK3Q9BYB0 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
SHANK3Q9BYB0 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
SHANK3Q9BYB0 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SHANK3Q9BYB0 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC20.64■□□□□ 0.89
SHANK3Q9BYB0 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC20.64■□□□□ 0.89
SHANK3Q9BYB0 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC20.64■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms