Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC20.73■□□□□ 0.91
CHMP4AQ9BY43 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CHMP4AQ9BY43 AP001282.1-201ENST00000531301 1499 ntBASIC20.73■□□□□ 0.91
CHMP4AQ9BY43 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC20.73■□□□□ 0.91
CHMP4AQ9BY43 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
CHMP4AQ9BY43 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CHMP4AQ9BY43 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC20.73■□□□□ 0.91
CHMP4AQ9BY43 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC20.73■□□□□ 0.91
CHMP4AQ9BY43 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC20.72■□□□□ 0.91
CHMP4AQ9BY43 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC20.72■□□□□ 0.91
CHMP4AQ9BY43 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC20.72■□□□□ 0.91
CHMP4AQ9BY43 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CHMP4AQ9BY43 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
CHMP4AQ9BY43 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC20.72■□□□□ 0.91
CHMP4AQ9BY43 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
CHMP4AQ9BY43 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC20.72■□□□□ 0.91
CHMP4AQ9BY43 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC20.72■□□□□ 0.91
CHMP4AQ9BY43 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC20.72■□□□□ 0.91
CHMP4AQ9BY43 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CHMP4AQ9BY43 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
CHMP4AQ9BY43 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC20.72■□□□□ 0.91
CHMP4AQ9BY43 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CHMP4AQ9BY43 RPL37AP1-201ENST00000412502 279 ntBASIC20.72■□□□□ 0.91
CHMP4AQ9BY43 BCRP1-201ENST00000444246 691 ntBASIC20.72■□□□□ 0.91
CHMP4AQ9BY43 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC20.72■□□□□ 0.91
CHMP4AQ9BY43 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC20.72■□□□□ 0.91
CHMP4AQ9BY43 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC20.72■□□□□ 0.91
CHMP4AQ9BY43 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC20.72■□□□□ 0.91
CHMP4AQ9BY43 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
CHMP4AQ9BY43 BTBD7P1-201ENST00000447253 1453 ntBASIC20.72■□□□□ 0.91
CHMP4AQ9BY43 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CHMP4AQ9BY43 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CHMP4AQ9BY43 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CHMP4AQ9BY43 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CHMP4AQ9BY43 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CHMP4AQ9BY43 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CHMP4AQ9BY43 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CHMP4AQ9BY43 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
CHMP4AQ9BY43 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CHMP4AQ9BY43 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
CHMP4AQ9BY43 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHMP4AQ9BY43 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC20.71■□□□□ 0.91
CHMP4AQ9BY43 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CHMP4AQ9BY43 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CHMP4AQ9BY43 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC20.71■□□□□ 0.91
CHMP4AQ9BY43 AL691432.1-201ENST00000596308 1422 ntBASIC20.71■□□□□ 0.91
CHMP4AQ9BY43 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHMP4AQ9BY43 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHMP4AQ9BY43 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHMP4AQ9BY43 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHMP4AQ9BY43 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC20.71■□□□□ 0.91
CHMP4AQ9BY43 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHMP4AQ9BY43 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHMP4AQ9BY43 MIR648-201ENST00000385046 94 ntBASIC20.71■□□□□ 0.91
CHMP4AQ9BY43 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHMP4AQ9BY43 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
CHMP4AQ9BY43 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHMP4AQ9BY43 AL080243.2-201ENST00000418783 582 ntBASIC20.71■□□□□ 0.91
CHMP4AQ9BY43 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC20.71■□□□□ 0.91
CHMP4AQ9BY43 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC20.71■□□□□ 0.91
CHMP4AQ9BY43 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC20.71■□□□□ 0.91
CHMP4AQ9BY43 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CHMP4AQ9BY43 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHMP4AQ9BY43 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC20.71■□□□□ 0.91
CHMP4AQ9BY43 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC20.71■□□□□ 0.91
CHMP4AQ9BY43 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC20.71■□□□□ 0.91
CHMP4AQ9BY43 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC20.71■□□□□ 0.91
CHMP4AQ9BY43 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC20.71■□□□□ 0.91
CHMP4AQ9BY43 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHMP4AQ9BY43 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHMP4AQ9BY43 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHMP4AQ9BY43 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CHMP4AQ9BY43 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHMP4AQ9BY43 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CHMP4AQ9BY43 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC20.7■□□□□ 0.9
CHMP4AQ9BY43 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
CHMP4AQ9BY43 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC20.7■□□□□ 0.9
CHMP4AQ9BY43 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
CHMP4AQ9BY43 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CHMP4AQ9BY43 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CHMP4AQ9BY43 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC20.7■□□□□ 0.9
CHMP4AQ9BY43 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC20.7■□□□□ 0.9
CHMP4AQ9BY43 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CHMP4AQ9BY43 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC20.7■□□□□ 0.9
CHMP4AQ9BY43 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CHMP4AQ9BY43 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CHMP4AQ9BY43 HNRNPA3P1-201ENST00000401429 1139 ntBASIC20.7■□□□□ 0.9
CHMP4AQ9BY43 FAM8A3P-201ENST00000427218 844 ntBASIC20.7■□□□□ 0.9
CHMP4AQ9BY43 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
CHMP4AQ9BY43 FAM207CP-201ENST00000443486 507 ntBASIC20.7■□□□□ 0.9
CHMP4AQ9BY43 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CHMP4AQ9BY43 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC20.7■□□□□ 0.9
CHMP4AQ9BY43 HNRNPA3P5-201ENST00000455201 833 ntBASIC20.7■□□□□ 0.9
CHMP4AQ9BY43 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
CHMP4AQ9BY43 AC004890.2-204ENST00000481968 304 ntBASIC20.7■□□□□ 0.9
CHMP4AQ9BY43 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CHMP4AQ9BY43 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC20.7■□□□□ 0.9
CHMP4AQ9BY43 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
CHMP4AQ9BY43 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC20.7■□□□□ 0.9
CHMP4AQ9BY43 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms