Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
NKX3-1Q99801 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC14.31□□□□□ -0.12
NKX3-1Q99801 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
NKX3-1Q99801 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
NKX3-1Q99801 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
NKX3-1Q99801 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
NKX3-1Q99801 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
NKX3-1Q99801 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
NKX3-1Q99801 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
NKX3-1Q99801 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
NKX3-1Q99801 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC14.31□□□□□ -0.12
NKX3-1Q99801 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
NKX3-1Q99801 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
NKX3-1Q99801 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC14.31□□□□□ -0.12
NKX3-1Q99801 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC14.31□□□□□ -0.12
NKX3-1Q99801 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC14.31□□□□□ -0.12
NKX3-1Q99801 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC14.31□□□□□ -0.12
NKX3-1Q99801 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
NKX3-1Q99801 TBCB-205ENST00000585746 875 ntTSL 3 BASIC14.31□□□□□ -0.12
NKX3-1Q99801 MTDHP4-201ENST00000600287 670 ntBASIC14.31□□□□□ -0.12
NKX3-1Q99801 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC14.31□□□□□ -0.12
NKX3-1Q99801 AL139288.1-201ENST00000623748 933 ntBASIC14.31□□□□□ -0.12
NKX3-1Q99801 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
NKX3-1Q99801 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
NKX3-1Q99801 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
NKX3-1Q99801 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
NKX3-1Q99801 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC14.31□□□□□ -0.12
NKX3-1Q99801 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
NKX3-1Q99801 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC14.31□□□□□ -0.12
NKX3-1Q99801 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC14.31□□□□□ -0.12
NKX3-1Q99801 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
NKX3-1Q99801 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
NKX3-1Q99801 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
NKX3-1Q99801 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
NKX3-1Q99801 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
NKX3-1Q99801 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC14.31□□□□□ -0.12
NKX3-1Q99801 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC14.31□□□□□ -0.12
NKX3-1Q99801 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
NKX3-1Q99801 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC14.31□□□□□ -0.12
NKX3-1Q99801 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
NKX3-1Q99801 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC14.31□□□□□ -0.12
NKX3-1Q99801 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC14.31□□□□□ -0.12
NKX3-1Q99801 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
NKX3-1Q99801 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
NKX3-1Q99801 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC14.3□□□□□ -0.12
NKX3-1Q99801 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
NKX3-1Q99801 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
NKX3-1Q99801 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
NKX3-1Q99801 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
NKX3-1Q99801 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
NKX3-1Q99801 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC14.3□□□□□ -0.12
NKX3-1Q99801 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
NKX3-1Q99801 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC14.3□□□□□ -0.12
NKX3-1Q99801 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC14.3□□□□□ -0.12
NKX3-1Q99801 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
NKX3-1Q99801 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
NKX3-1Q99801 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
NKX3-1Q99801 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
NKX3-1Q99801 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
NKX3-1Q99801 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
NKX3-1Q99801 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
NKX3-1Q99801 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
NKX3-1Q99801 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
NKX3-1Q99801 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
NKX3-1Q99801 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
NKX3-1Q99801 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
NKX3-1Q99801 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC14.3□□□□□ -0.12
NKX3-1Q99801 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
NKX3-1Q99801 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
NKX3-1Q99801 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
NKX3-1Q99801 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
NKX3-1Q99801 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC14.3□□□□□ -0.12
NKX3-1Q99801 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC14.3□□□□□ -0.12
NKX3-1Q99801 CYP2A7P1-201ENST00000595391 815 ntBASIC14.3□□□□□ -0.12
NKX3-1Q99801 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC14.3□□□□□ -0.12
NKX3-1Q99801 AC126755.1-201ENST00000525846 6405 ntBASIC14.3□□□□□ -0.12
NKX3-1Q99801 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
NKX3-1Q99801 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC14.3□□□□□ -0.12
NKX3-1Q99801 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC14.3□□□□□ -0.12
NKX3-1Q99801 LINC02447-202ENST00000501888 2146 ntBASIC14.3□□□□□ -0.12
NKX3-1Q99801 AC104640.1-201ENST00000562617 2109 ntBASIC14.3□□□□□ -0.12
NKX3-1Q99801 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
NKX3-1Q99801 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
NKX3-1Q99801 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
NKX3-1Q99801 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
NKX3-1Q99801 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
NKX3-1Q99801 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC14.3□□□□□ -0.12
NKX3-1Q99801 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
NKX3-1Q99801 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC14.3□□□□□ -0.12
NKX3-1Q99801 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC14.3□□□□□ -0.12
NKX3-1Q99801 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC14.3□□□□□ -0.12
NKX3-1Q99801 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC14.3□□□□□ -0.12
NKX3-1Q99801 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC14.29□□□□□ -0.12
NKX3-1Q99801 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
NKX3-1Q99801 CDC14C-201ENST00000428251 1719 ntBASIC14.29□□□□□ -0.12
NKX3-1Q99801 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC14.29□□□□□ -0.12
NKX3-1Q99801 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
NKX3-1Q99801 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
NKX3-1Q99801 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
NKX3-1Q99801 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms